BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894086

Length=630
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22160.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   579    1e-164


> AT5G22160.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G22150.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:7346944-7349255 FORWARD LENGTH=1062
Length=1062

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 500/585 (85%), Gaps = 33/585 (6%)
 Strand=Plus/Plus

Query  62   CTCCTCCTCCTCGTCG-TAGATGGTGGTCACGACCAATAGTGACTATACCGCCAACG-CA  119
            |||||||||||||| | | |||||||||||||||||||||||||  | |||  || |  |
Sbjct  26   CTCCTCCTCCTCGT-GTTGGATGGTGGTCACGACCAATAGTGACCGTGCCGTTAA-GTAA  83

Query  120  TGTTCGTGAAGCCACTTGTATGGAAACTACGGTTTG-CTGTACACCTTGTTGGGCCGG-C  177
            || ||||||| ||||||| | ||||||||| ||||| || |||||| ||||| ||||| |
Sbjct  84   TGATCGTGAACCCACTTGCAAGGAAACTACTGTTTGCCT-TACACCCTGTTGCGCCGGCC  142

Query  178  TTATTCACCATCCTCGCCGTTTATTTATTGCTCTTTCACGTCATCGATAATGCTCGCTGC  237
            || ||||||||| |||| || ||||||||| ||||||||||| || ||||||||| ||||
Sbjct  143  TT-TTCACCATCGTCGCTGTATATTTATTGATCTTTCACGTCGTCAATAATGCTCACTGC  201

Query  238  CAAGCCAAATTCTCCATCCAATCCATCGCTGTCTCTCCCTCCTCTGCCACGTGGCAC-TT  296
            || |||||||||||||||||||||||||| |||||||||||||| |||||||||||| | 
Sbjct  202  CACGCCAAATTCTCCATCCAATCCATCGCCGTCTCTCCCTCCTCCGCCACGTGGCACGTG  261

Query  297  GATTTCCTCGTCAAAAA-CC---CT--A-G----C--TC--C-A--G--CCGATGAAACT  336
            ||||||||||||||||| ||   ||  | |    |  ||  | |  |  |||||||||||
Sbjct  262  GATTTCCTCGTCAAAAACCCTAGCTCCAGGTACTCTATCTACTACGGACCCGATGAAACT  321

Query  337  ACCGTGAGTCTCGGTCCTTTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAAGTCT  396
             |||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct  322  GCCGTGAGTCTTGGTCCCGTAAACGCTGCCGTTTTAGATACTTTTCACGAACGTAAGTCT  381

Query  397  CGAAGTCACACGGCCTTCTCAGTGGATTTCGTTGCCGAGGGTAATCCAAACGGAGTCGTT  456
            |||||||||||||| ||||||||||||||| ||||||||||||| || ||||| ||||||
Sbjct  382  CGAAGTCACACGGCTTTCTCAGTGGATTTCATTGCCGAGGGTAACCCTAACGGCGTCGTT  441

Query  457  TTCGAAGAATTATATATCAAATTAAAGGCGACTCATAAGGTTTACAGATATGTCTTTGAT  516
            ||| ||||||||||| ||||||||||| |||  |||||| ||||| || ||||||||| |
Sbjct  442  TTCAAAGAATTATATGTCAAATTAAAGACGAAACATAAGATTTACGGAAATGTCTTTGGT  501

Query  517  AACGCTGGACATATTGATATCAGGTGTCATAATCTAACCCGAAGCTATGAGAACGTTGAG  576
             | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  502  TATGCTGGACATATTGATATAAGGTGTCAAAATCTAACCCGAAGCTATGAGAACGTTGAG  561

Query  577  AGGATTCAATG-TCACTCTTCTTACACAAAGT-TGGAGACTTTGA  619
            | |||||| || | |||||||||||||| | | || || ||||||
Sbjct  562  AAGATTCATTGCT-ACTCTTCTTACACAGA-TATGAAGGCTTTGA  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30391658935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5