BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894117
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 1081 0.0
AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family | c... 575 2e-163
AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family... 532 1e-150
> AT5G22440.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr5:7435076-7436686 REVERSE LENGTH=996
Length=996
Score = 1081 bits (585), Expect = 0.0
Identities = 632/655 (96%), Gaps = 2/655 (0%)
Strand=Plus/Plus
Query 1 ATGAGTAAGCTTCAGAGTGAAGCCGTAAGAGAGGCAATATCCTCCATTATCACTCACTGC 60
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 91 ATGAGTAAGCTTCAGAGTGAAGCCGTGAGAGAGGCAATAAGCTCCATTATCACTCACTGT 150
Query 61 AAGGAGACTAAGCCACGCAACTTCACTGAGACTATTGAACTCCAGATTGGTCTTAAGAAC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 151 AAGGAGACAAAGCCACGCAACTTCACTGAGACTATTGAACTCCAGATTGGTCTCAAGAAC 210
Query 121 TATGACCCTCAAAAGGACAAGAGATTTAGCGGTTCGGTGAAATTGCCTCACGTTCCTAGG 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 211 TATGACCCTCAAAAGGACAAGAGATTTAGCGGTTCTGTGAAATTGCCTCACGTTCCTAGG 270
Query 181 CCAAAGATGAAGATTTGCATGCTTGGAGACGCCCAGCACGTCGAAGAGGCTGAGAAGATT 240
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 271 CCAAAGATGAAGATTTGCATGCTTGGTGATGCCCAGCACGTCGAAGAGGCTGAGAAGATT 330
Query 241 GGATTGGAATCTATGGATGTTGAAGCTCTTAAGAAGTTGAACAAGAACAAGAAACTTGTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GGATTGGAATCTATGGATGTTGAAGCTCTTAAGAAGTTGAACAAGAACAAGAAACTTGTT 390
Query 301 AAGAAGCTTGCTAAGAAATTCCATGCTTTCCTTGCTTCGGAATCTGTCATTAAGCAGATT 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 391 AAGAAGCTTGCTAAGAAATTCCATGCTTTCCTTGCTTCTGAATCTGTCATTAAGCAGATT 450
Query 361 CCTCGTCTTCTTGGTCCCGGTCTCAACAAGGCAGGAAAGTTCCCAACTCTTGTTAGCCAC 420
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 451 CCTCGTCTTCTTGGTCCTGGTCTCAACAAGGCAGGAAAATTCCCAACTCTTGTTAGCCAC 510
Query 421 CAAGAGTCTTTGGAATCGAAAGTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAG 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CAAGAGTCTTTGGAATCCAAAGTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAG 570
Query 481 AAGGTTCTCTGTATGGGAGTCGCTGTCGGGAATCTTTCCATGGAAGAGAAGCAGATCTTT 540
|||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 571 AAGGTTCTATGTATGGGAGTTGCTGTCGGTAATCTTTCCATGGAGGAGAAGCAGATCTTT 630
Query 541 CAGAATGTTCAGATGAGTGTTAACTTCCTCGTTTCACTTCT-GAAGAAAAACTGGCAGAA 599
|| |||||||||||||||||||||||||||||||| || || ||||||||||||||| ||
Sbjct 631 CAAAATGTTCAGATGAGTGTTAACTTCCTCGTTTCTCT-CTTGAAGAAAAACTGGCAAAA 689
Query 600 TGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCGAACCGAGTTTTCTAA 654
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 690 TGTGAGGTGCTTGTACTTGAAGAGCACAATGGGTCCACCAAACCGAGTTTTCTAA 744
> AT1G08360.1 | Symbols: | Ribosomal protein L1p/L10e family |
chr1:2636011-2637915 FORWARD LENGTH=949
Length=949
Score = 575 bits (311), Expect = 2e-163
Identities = 479/559 (86%), Gaps = 16/559 (3%)
Strand=Plus/Plus
Query 88 GAGACTATTGAACTCCAGATTGGTCTTAAGAACTATGACCCTCAAAAGGACAAGAGATTT 147
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| | |||
Sbjct 162 GAGACTATTGAGCTCCAGATCGGTCTGAAGAACTATGACCCTCAAAAGGACAAGCG-TTT 220
Query 148 -AGCGGTTCGGTGAAATTGCCTCACGTTCCTAGGCC-AAAGATGAAGATTTGCATGCTTG 205
|| || || || || || || || | || | || ||| |||||||| |||||||| |
Sbjct 221 CAGTGGATCTGTCAAGTTACCACATATCCCCCGTCCTAAA-ATGAAGATCTGCATGCTCG 279
Query 206 GAGACGCCCAGCACGTCGAAGAGGCTGAGAAGATTGGATTGG-AATCTATGGATGTTGAA 264
|||| |||||||| || ||||||||||||||||| || |||| || | |||||||||| |
Sbjct 280 GAGATGCCCAGCATGTTGAAGAGGCTGAGAAGATGGGGTTGGAAAAC-ATGGATGTTG-A 337
Query 265 G-CTCTTAAGAAG-TTGAACAAGAACAAGAAACTTGTTAAGAAGCTTGCTAAGAAATTCC 322
| |||| || ||| || ||||||||||||||||| || ||||||||||| ||||||| ||
Sbjct 338 GTCTCTAAAAAAGCTT-AACAAGAACAAGAAACTCGTCAAGAAGCTTGCAAAGAAATACC 396
Query 323 ATGCTTTCCTT-GCTTCGGAATCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCCGGT 381
||||||| ||| || || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 397 ATGCTTT-CTTGGCCTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCTGGT 455
Query 382 CTCAACAAGGCAGGAAAGTTCCCAACTCTTGTTAGCCACCAAGAGTCTTTGGAATCGAAA 441
|| |||||||||||||| |||||||||||||| |||||||| || || ||||| || |||
Sbjct 456 CTTAACAAGGCAGGAAAATTCCCAACTCTTGTGAGCCACCAGGAATCCTTGGAGTC-AAA 514
Query 442 -GTGAATGAGACAAAGGCAACAGTGAAGTTCCAGCTCAAGAAGGTTCTCTGTATGGGAGT 500
|||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 515 GGTGAATGAAACAAAGGCAACAGTGAAGTTCCAGCTGAAGAAGGTTCTGTGCATGGGAGT 574
Query 501 CGCTGTCGGGAATCTTTCCATGGAAGAGAAGCAGATCTTTCAGAATGTTCAGATGAGTGT 560
|| || || || ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 575 TGCAGTTGGTAACCTTTCAATGGAAGAGAAGCAGATCTTTCAGAATGTGCAGATGAGCGT 634
Query 561 TAACTTCCTCGTTTCACT-TCTGAAGAAAAACTGGCAGAATGTGAGGTGCTTGTACTTGA 619
||||||||||| || || | ||||||| |||||||| ||||| ||||| |||||| | |
Sbjct 635 CAACTTCCTCGTCTCGCTAT-TGAAGAAGAACTGGCAAAATGTCAGGTGTTTGTACCTCA 693
Query 620 AGAGCACAATGGGTCCACC 638
||||||||||||| |||||
Sbjct 694 AGAGCACAATGGGACCACC 712
> AT2G27530.1 | Symbols: PGY1 | Ribosomal protein L1p/L10e family
| chr2:11763217-11764845 REVERSE LENGTH=989
Length=989
Score = 532 bits (288), Expect = 1e-150
Identities = 475/563 (84%), Gaps = 22/563 (4%)
Strand=Plus/Plus
Query 87 TGAGACTA-TTGAACTCCAGATTGGTCTTAAGAACTATGACCCTCAAAAGGACAAGAGAT 145
|||||| | | || || ||||||||||| |||||||||||||| |||||||| ||| | |
Sbjct 196 TGAGAC-AGTGGAGCTTCAGATTGGTCTGAAGAACTATGACCCACAAAAGGATAAGCG-T 253
Query 146 TT-AGCGGTTCGGTGAAATTGCCTCACGTTCCTAGGCCAAAGATGAAGATTTGCATGCTT 204
|| || || || ||||| | || || ||||| | ||||| |||||||| || ||||||
Sbjct 254 TTCAGTGGATCTGTGAAGCTCCCACATATTCCTCGCCCAAAAATGAAGATCTGTATGCTT 313
Query 205 GGAGACGCCCAGCACGTCGAAGAGGCTGAGAAGATTGGA-TT-GGAATCTATGGATGTTG 262
||||| || ||||| || || ||||| ||||| || ||| || | || | ||||||||||
Sbjct 314 GGAGATGCTCAGCATGTTGAGGAGGCAGAGAAAATGGGACTTAGTAA-C-ATGGATGTTG 371
Query 263 AAGCTCTT-AAGAAG-TTGAACAAGAACAAGAAACTTGTTAAGAAGCTTGCTAAGAAATT 320
| ||| || || ||| || |||||||||||||| ||||||||||||||||||||| ||
Sbjct 372 AGGCT-TTGAAAAAGCTT-AACAAGAACAAGAAGCTTGTTAAGAAGCTTGCTAAG-TCTT 428
Query 321 -CCATGCTTTCCTT-GCTTCGGAATCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCC 378
||||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 429 ACCATGCTTT-CTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCTCGTCTTCTTGGTCCT 487
Query 379 GGTCTCAACAAGGCAGGAAAGTTCCCAACTCTTGTTAGCCACCAAGAGTCTTTGGAATCG 438
||||| ||||||||||||||||||||||| ||||| || ||||||||||| |||||| |
Sbjct 488 GGTCTTAACAAGGCAGGAAAGTTCCCAACACTTGTGAGTCACCAAGAGTCATTGGAAGC- 546
Query 439 AAAG-TGAATGAGAC-AAAGGCAACAGTGAAGTTCCAGCTCAAGAAGGTTCTCTGTATGG 496
|||| |||||||||| |||| ||||||||||||||||| | ||||| ||||| |||||||
Sbjct 547 AAAGGTGAATGAGACCAAAG-CAACAGTGAAGTTCCAGTTGAAGAAAGTTCTGTGTATGG 605
Query 497 GAGTCGCTGTCGGGAATCTTTCCATGGAAGAGAAGCAGATCTTTCAGAATGTTCAGATGA 556
| || ||||| || || ||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 606 GTGTTGCTGTTGGTAACCTTTCCATGGAAGAGAAGCAGCTCTTCCAGAATGTGCAGATGA 665
Query 557 GTGTTAACTTCCTCGTTTCACTTCT-GAAGAAAAACTGGCAGAATGTGAGGTGCTTGTAC 615
|||||||||||||||| || || || |||||| || ||||| || || ||||| ||||||
Sbjct 666 GTGTTAACTTCCTCGTCTCGCT-CTTGAAGAAGAATTGGCAAAACGTAAGGTGTTTGTAC 724
Query 616 TTGAAGAGCACAATGGGTCCACC 638
||||||||||| ||||| |||||
Sbjct 725 TTGAAGAGCACCATGGGACCACC 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5