BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894125
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22540.1 | Symbols: | Plant protein of unknown function (DU... 1980 0.0
> AT5G22540.1 | Symbols: | Plant protein of unknown function (DUF247)
| chr5:7481478-7482953 REVERSE LENGTH=1476
Length=1476
Score = 1980 bits (1072), Expect = 0.0
Identities = 1243/1326 (94%), Gaps = 9/1326 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCACAGATTGTTGTAAACATAAATAACTTAATCTCAGCAGATAATGGTCTGAAG 60
||||||||||||||||||||| ||||||| | |||||||||| |||||||||| |||||
Sbjct 86 ATGGATCCACAGATTGTTGTAGACATAAAGAGTTTAATCTCAGAAGATAATGGTTTGAAG 145
Query 61 CTTCTGAGAGAATCAGCTGGATCAGAGTCATGTTGCAACGTGAGAATCCCACAGAGCCTA 120
||||| |||||||||||||| ||||||| |||||||| |||||||||||||||||||||
Sbjct 146 CTTCTTAGAGAATCAGCTGGTTCAGAGTTATGTTGCATCGTGAGAATCCCACAGAGCCTC 205
Query 121 GCTCGAATCAACCTCAAAGCTTACGAACCCAAGATTGTCTCCATTGGTCCTTACCATCAC 180
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 206 GCTCGAATCAACCTCAAAGCTTATGAACCGAAGATTGTCTCCATTGGTCCTTACCATCAC 265
Query 181 GGCAAAGAACATCTCAAAATGACTCATCAGCACAAACGCCGCTTCTTGAAGTTTTTCGTG 240
|||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 266 GGCAAAGAGCATCTCAAAATGACTCAGCAGCATAAACGCCGATTCTTGAAGTTTTTCGTG 325
Query 241 GCTAAAATGGAAG-AAAAGGGTATTGATCCTCAAGAATTGGTCAAAGCTGTATCAAGTTT 299
||||||||||||| |||||| | ||| ||||||||||||||||||||||||||| |||||
Sbjct 326 GCTAAAATGGAAGAAAAAGGAT-TTGTTCCTCAAGAATTGGTCAAAGCTGTATCGAGTTT 384
Query 300 GGAAGGAGTTATAAGAGGTTCTTACTCCGAGGATCTTGGTTTAGATCCTGAAAAATTGGT 359
||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| |||||
Sbjct 385 GGAAGGAGTTATACGAGGTTCTTACTCCGAGGATCTAGGTTTAGATTCTGAAAACTTGGT 444
Query 360 TGAGATGATGGTTCTTGATGGTTGCTTTATCCTCACGTTGTTCTTTGTTGTTTCCGGGAA 419
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCAGATGATGGTTCTTGATGGTTGCTTTATCCTCACGTTGTTCTTTGTTGTTTCCGGGAA 504
Query 420 AGTTGTTTACACCAATCTTGATGATCCTA-TTTTCAGAATGCCATGGATTTTACCGTCGA 478
||||| ||||| |||||||||||||| | ||||| ||||||| |||||||| |||||||
Sbjct 505 AGTTGAATACACTAATCTTGATGATCCGATTTTTC-GAATGCCGTGGATTTTGCCGTCGA 563
Query 479 TTCGAGCGGATCTTCTCCTTTTGGAAAACCAGGTTCCTTTTGTTCTTCTTCAAACTCTAT 538
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 564 TTCGAGCAGATCTTCTCCTTTTGGAAAACCAGGTTCCTTATGTTCTTCTTCAAACTCTAT 623
Query 539 TCGAAACATCGAAGTTAGTTACTTGTAGTGGTTTAAACGAAATCGCCTTTGAATTCTTTG 598
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 TTGAAACATCGAAGTTAGTTACTTGTAGTGGTTTAAACGAAATCGCCTTTGAATTCTTTA 683
Query 599 ACTACTCATTACAAAGACCTGAGACGTTTTGGGCAAAACATTATGGTCTTGAAGCAAAAC 658
||||||||||||||| ||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 684 ACTACTCATTACAAAAACCAGAGACCTTTTGGGAAAAACATTATGGTCTTGAAGCAAAAC 743
Query 659 ATCTTCTTGATTTGATACGTAAGACTTTTGTTCCCGTTCCGTCTCAAAGAAGCATCAAAG 718
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 744 ATCTTCTTGATTTGATACGTAAGACTTTTGTTCCTGTTCCGTCTCAAAGAAGAATCAAAG 803
Query 719 ATC--A-CCGTAAATCGTCATTCAATGATCATGAATTTCTCGGATTCGTTCTCTCAGCCA 775
||| | | ||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 804 ATCATAGCAGTAAATCGTCATTCAATGATCATGAATATCTCGGATTTGTTCTCTCTGCCA 863
Query 776 AGAAGCTTCATCTTCGGGGAATCAAATTCAAACCGAGGAAGAACACAGACTCAATCTTAG 835
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 864 AGAAGCTTCATCTTCGGGGAATCAAATTCAAACCGAGGAAAAACACAGACTCAATCTTAG 923
Query 836 ACATAAGGTATAGTAATGGTGTGCTTCATATTCCTCCGGTAGTCATGGATGATTTTACTG 895
|||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 924 ACATTAGTTATAGTAATGGTGTGCTTCACATTCCTCCGGTAGTCATGGATGATTTTACCG 983
Query 896 CCTCGGTCTTCTTAAATTGTGTTGCATTTGAGCAATTATATGCTGATTCATCGAACCACA 955
||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 984 CCTCGATCTTTTTAAACTGTGTCGCATTTGAGCAATTATATGCTGATTCATCGAACCACA 1043
Query 956 TAACGAGCTACGTAGCTTTCATGGCTTGTCTTATAAACGAAGAGAGCGATGCGGCGTTCC 1015
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1044 TAACGAGCTACGTAGCTTTCATGGCTTGTCTTATAAACGAAGAGAGTGATGCATCGTTCC 1103
Query 1016 TTA-CTGAAAGAAGGATCCTAGAAAACTATTTTGGAACAGAGGATGAAGTGTCCCGGTTT 1074
||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1104 TTAGC-GAAAGGAGGATCCTAGAGAACTATTTTGGAACAGAGGATGAAGTGTCCCGGTTC 1162
Query 1075 TATAAACGCATTGGTAAAGACATTGCTCTCGACTTAGAGAAGAGTTACTTAGCAAAGGTG 1134
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1163 TATAAACGCATTGGTAAAGACATTGCCCTCGACTTAGAGAAGAGTTACCTAGCAAAGGTG 1222
Query 1135 TTTGAAGGAGTTAACGAGTATACTTCTAAAGGATTTCATGTTCACTGCGCAGAGTTTATT 1194
||||||||||||||||||||||||||| ||||||| |||||||| || ||||||||||||
Sbjct 1223 TTTGAAGGAGTTAACGAGTATACTTCTCAAGGATTCCATGTTCATTGTGCAGAGTTTATT 1282
Query 1195 CACACGCATTTCGATAGTCCATGGACATTTGCGTCGTCATTTGCAGCGTTGTTGCTTCTT 1254
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1283 CATACGCATTTCGATAGTCCATGGACATTTGCATCATCATTTGCAGCGTTGTTGCTTCTT 1342
Query 1255 ATGTTTGCAGCTTTGCAAGTCTTCTTTGCAGCTTATAGTTATTTCTGTCCTCCGAAAGGA 1314
||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |
Sbjct 1343 CTGTTTGCGGCTTTGCAAGTCTTCTTTGCAGCTTATAGTTATTTCCGTCCTCCAAAAGAA 1402
Query 1315 AAGTGA 1320
||||||
Sbjct 1403 AAGTGA 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5