BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894136

Length=1197
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G35760.1 | Symbols:  | Beta-galactosidase related protein | ...   119    7e-26


> AT5G35760.1 | Symbols:  | Beta-galactosidase related protein 
| chr5:13934108-13934782 FORWARD LENGTH=534
Length=534

 Score =  119 bits (64),  Expect = 7e-26
 Identities = 68/70 (97%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  744  CAAAAGAGTGAAGAAGAACGGCATTATGATCCCGTCTCCACGGAGCGGTGGTTACCGAAG  803
            |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct  6    CAAAAGAGTGAAGAAGAACGCCATTATGATCCCATCTCCACGGAGCGGTGGTTACCGAAG  65

Query  804  CTTCTTCAAC  813
            ||||||||||
Sbjct  66   CTTCTTCAAC  75



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 58784838195


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5