BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894139
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2, AT... 1009 0.0
> AT5G22650.1 | Symbols: HD2B, HDT02, HDT2, ATHD2B, HDA4, HD2,
ATHD2 | histone deacetylase 2B | chr5:7534017-7536273 FORWARD
LENGTH=1243
Length=1243
Score = 1009 bits (546), Expect = 0.0
Identities = 778/887 (88%), Gaps = 27/887 (3%)
Strand=Plus/Plus
Query 31 GGAGTTGAAGTGAAACCAGGGAACCCTACTAAGGTGACTCCTGAAGAAGACTGCCTTGTC 90
||||||| |||| |||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 116 GGAGTTGCGGTGACACCAAAAAACGCTACTAAGGTGACTCCTGAAGAAGACAGCCTTGTC 175
Query 91 CACATTTCTCAGGCTTCCCTTGACTGCAAAGTGAAATCTGGAGAATCTGTGCTTTTGACT 150
||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
Sbjct 176 CACATTTCTCAGGCTTCACTTGACTGCACAGTGAAATCTGGAGAATCTGTGGTTTTGAGT 235
Query 151 GTCACTGTTGATGGGACTAAGCTTGTTATTGGAACACTTTCACAAGAGAAGTTCCCTCAG 210
|| ||||||| |||| |||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 236 GTGACTGTTGGTGGGGCTAAACTTGTTATTGGAACACTTTCACAAGACAAGTTCCCTCAG 295
Query 211 ATTAGCTTTGATTTGGTCTTTGAGAGAGAGTTTGAGCTTTCCCACAATGGTACCAAAGGA 270
||||||||||||||||| ||||| | ||||||||||||||| |||| |||||||||| |
Sbjct 296 ATTAGCTTTGATTTGGTTTTTGATAAAGAGTTTGAGCTTTCACACAGCGGTACCAAAGCA 355
Query 271 ACCGTCCACTTCATTGGCTACAGATCCCCCAACATCGACCATGAGGACTACACTAGTTCA 330
| || || ||||||||||||| ||||||||||||||| || || |||| |||||||||
Sbjct 356 AATGTTCATTTCATTGGCTACAAATCCCCCAACATCGAGCAGGATGACTTCACTAGTTCG 415
Query 331 GAAGAGGAGGATGTTCCTGAAGCTGTCCCTGCCCCTGTTCCTGCAGCTGTTGCTGTCAAT 390
|| || |||||||||||||||||||| ||||| |||| ||| | |||||| ||| |||
Sbjct 416 GATGATGAGGATGTTCCTGAAGCTGTTCCTGCTCCTGCCCCTACTGCTGTTACTGCCAAC 475
Query 391 GGAAGTGCTGGAGCAGCTGCTTCGAATGTTGTCAAGGCTGACTCAAAGCCAAAGGCCAAG 450
|||| |||||||||| | | |||||||||||||||| ||||||||||||||||
Sbjct 476 GGAAATGCTGGAGCA---G---C---TGTTGTCAAGGCTGACACAAAGCCAAAGGCCAAA 526
Query 451 CCTGCAGAAGTGAAGCCTGCAGAAGTGAAACCTGAATCAGAAGATGATGAGGATTCCTCT 510
||||| ||||||||||||||||||| ||| ||||||||||| || | || ||| |||
Sbjct 527 CCTGCCGAAGTGAAGCCTGCAGAAGAGAAGCCTGAATCAGACGA-G--GAAGATGAGTCT 583
Query 511 GACGAGGAAGATGAGTCTGCtgatgatgatgactctgagaaaggaatggatgttgacgag 570
|| || ||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 584 GATGATGAAGATGAGTCTGAAGAGGATGATGACTCTGAGAAAGGAATGGATGTTGATGAA 643
Query 571 gatgattc---tgatgatgaggaggatgaATCAGAGGAAGAAGAAGA--A-GAGACTCCC 624
||||| || |||||| |||||||| || || ||||| |||||||| | ||||||||
Sbjct 644 GATGACTCAGATGATGACGAGGAGGAGGATTCTGAGGATGAAGAAGAGGAGGAGACTCCT 703
Query 625 AAGAAGCCTGAGCCAATCAACAAGAAGAGGCCTAATGAATCTACATCCAAAACACCTGTC 684
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct 704 AAGAAGCCTGAGCCAATCAACAAGAAGAGGCCAAATGAATCTGTATCCAAAACACCCGTC 763
Query 685 TCTGGAAAGAAGGCAAAACCAGCAGCAGCACCAGCAGCTACTCCTCAGAAGACAGAAGAG 744
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 764 TCTGGAAAGAAGGCAAAACCAGCAGCAGCACCAGCTTCTACTCCTCAGAAGACAGAAGAG 823
Query 745 AAGAAGAAAGGAGGACACACAGCCACACCACACCCAGCTAAGAGGGGTGGAAAGTCTCCT 804
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 824 AAGAAGAAAGGAGGACACACCGCCACACCACACCCAGCTAAGAAGGGTGGAAAGTCTCCT 883
Query 805 GTGAATGCTAACCAGAGCCCCAAGGCTGGAGGTCAATCATCCGGTGGTAACAA------G 858
|||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 884 GTGAATGCTAACCAGAGCCCCAAGTCTGGAGGTCAATCATCCGGTGGTAACAACAACAAG 943
Query 859 AA---ATTCAATTCGGGCAAACAATTTGGTGGTTCTAACAACAAGGG 902
|| |||||| || |||||||||||||||||||| |||||||||||
Sbjct 944 AAGCCATTCAACTCAGGCAAACAATTTGGTGGTTCCAACAACAAGGG 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5