BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894141 Length=1779 Score E Sequences producing significant alignments: (Bits) Value AT5G22730.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 597 1e-169 AT5G22700.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 176 6e-43 > AT5G22730.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr5:7551429-7553452 REVERSE LENGTH=1837 Length=1837 Score = 597 bits (323), Expect = 1e-169 Identities = 407/448 (91%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 104 CTATGCGTTTAGAAGAAAATGTATACGCCAATGATGCAGG-TCTGGAGTCACTTATCTCG 162 ||||||||||||||||||||||||| |||||||||| || ||| ||||||||||||||| Sbjct 772 CTATGCGTTTAGAAGAAAATGTATATGCCAATGATG-TGGTTCTAGAGTCACTTATCTCG 830 Query 163 TCTTGCCCAGTTCTCGAAGATTTGAGCATTCTTAGAATGGTAGAAGACAACATAAAGGTC 222 ||||||||||||||| ||||||||| ||||||||||||| | ||||| ||| |||||||| Sbjct 831 TCTTGCCCAGTTCTCAAAGATTTGATCATTCTTAGAATGTTTGAAGATAACGTAAAGGTC 890 Query 223 CTACGAGTGCACTCTCTGACATTAACCAGTCTTGATATAGACTTTT-ATTTTGGTGAGAA 281 ||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||| ||| Sbjct 891 CTACGAGTGCACTCTCTGACACTAACCAGTCTTAATATAGA-TTTTAATTTTGGGGAGGG 949 Query 282 TGATGACATGGTTGATGATTTTGATACAAAACACTCAGAGGTTTTGATTGATGCCCCTCG 341 ||||||| | ||||||| |||||||| |||| ||||| ||||||||||||||| ||||| Sbjct 950 TGATGACTTCGTTGATGGTTTTGATAAAAAAGTCTCAGGGGTTTTGATTGATGCACCTCG 1009 Query 342 ACTCAAGTATTTGAAATTCCAAGATGATCTATCGGAGAGTAAAGTCATAACCAATTCGGG 401 ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 1010 ACTCAAGTATTTGAAATTCCAAGATGATCTATCGGGGAGTAAAATCATAACCAATTCGGG 1069 Query 402 TTCCTTAGCCAAGGTCAACATTGTTTATGTCTTTAATGAGAATGATTGTGCTGATGTTGT 461 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 1070 CTCCTTAGCCAAGGTCAATGTTGTTTATGTCTTCAATGAGAATGATTGTGCTGATGTTGT 1129 Query 462 CGACTTACCAAGGCGAAATATGGTCCGTAAtttttttATCAGTATCTCGGGAGTTAGAGA 521 ||| ||||||| |||||||||||||||||||| || | |||||||||||||||||| || Sbjct 1130 TGACATACCAAGACGAAATATGGTCCGTAATTTCTTAACCAGTATCTCGGGAGTTAGCGA 1189 Query 522 TATGAAGATCTCTGGGCATTTTGTGGAG 549 ||||||||||||| ||||||||||||| Sbjct 1190 TATGAAGATCTCTCAGCATTTTGTGGAG 1217 Score = 104 bits (56), Expect = 3e-21 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26 TGAAAGCGAAATACCGCGAACGGCCGCCGCTAACTTACTTAATTGCTGGAGAGGATCTGA 85 |||||||||||||| |||||||| ||| | ||||||||| || |||||||||||||||| Sbjct 262 TGAAAGCGAAATACGGCGAACGGTCGCAGGGAACTTACTTCATGGCTGGAGAGGATCTGA 321 Query 86 TAAGCAAATTACCTGAT 102 ||||||||||||||||| Sbjct 322 TAAGCAAATTACCTGAT 338 > AT5G22700.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr5:7545516-7547595 REVERSE LENGTH=1583 Length=1583 Score = 176 bits (95), Expect = 6e-43 Identities = 222/282 (79%), Gaps = 14/282 (5%) Strand=Plus/Plus Query 878 GTTTCGCCTCT-GGATTTCTAG-ATT-TCCATAAGGACTCATGCTTACACAAGTTCAAGA 934 ||||||||||| || ||||| | ||| ||| ||||| ||||||||||||||||||||| Sbjct 320 GTTTCGCCTCTCGG-TTTCTTGAATTCTCC--AAGGATTCATGCTTACACAAGTTCAAGC 376 Query 935 TTTTTGGTAAGAGGAAAGATGTTAG-TATGTGTACAATCATGTGGTGGCTCCATA-ATGC 992 ||| | | ||||| | |||||| | |||||||||||||||| |||| |||| | | || Sbjct 377 TTTCAGTTGAGAGGGATGATGTT-GATATGTGTACAATCATGCCGTGGATCCA-AGACGC 434 Query 993 AGTTAAGCGTAAAATCCGACATCTTGATGTCGAGTGT-TATTTGGAACAGATGATTGATA 1051 ||||| |||| ||||| ||||||||| ||||| ||| || | || |||| Sbjct 435 TGTTAATCGTAGAATCCAACATCTTGAAGTCGACTGTCGCTTCAGTTTTCAT-TTTGAGG 493 Query 1052 TGGTGCCTCTAAGCCTTTACTTAAGTGAGACTTTGGTTTCATTGAGACTTAATTGTT-TG 1110 ||| ||||| ||||||||||||||||||||||||||||||||||||| ||| || || Sbjct 494 CAGTGTATCTAACCCTTTACTTAAGTGAGACTTTGGTTTCATTGAGACTTCATT-TTGTG 552 Query 1111 GTTCTGGTTTGTTTCGAGTTTGTGTCTTTGCCTAATCTCAAG 1152 ||| | ||| ||||||||| |||||||| ||||||||| Sbjct 553 ACGCTGCATCGTTACGAGTTTGTATCTTTGCCAAATCTCAAG 594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88001555385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5