BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894141

Length=1779
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22730.1 | Symbols:  | F-box/RNI-like/FBD-like domains-conta...   597    1e-169
  AT5G22700.1 | Symbols:  | F-box/RNI-like/FBD-like domains-conta...   176    6e-43 


> AT5G22730.1 | Symbols:  | F-box/RNI-like/FBD-like domains-containing 
protein | chr5:7551429-7553452 REVERSE LENGTH=1837
Length=1837

 Score =  597 bits (323),  Expect = 1e-169
 Identities = 407/448 (91%), Gaps = 4/448 (1%)
 Strand=Plus/Plus

Query  104   CTATGCGTTTAGAAGAAAATGTATACGCCAATGATGCAGG-TCTGGAGTCACTTATCTCG  162
             ||||||||||||||||||||||||| ||||||||||  || ||| |||||||||||||||
Sbjct  772   CTATGCGTTTAGAAGAAAATGTATATGCCAATGATG-TGGTTCTAGAGTCACTTATCTCG  830

Query  163   TCTTGCCCAGTTCTCGAAGATTTGAGCATTCTTAGAATGGTAGAAGACAACATAAAGGTC  222
             ||||||||||||||| ||||||||| ||||||||||||| | ||||| ||| ||||||||
Sbjct  831   TCTTGCCCAGTTCTCAAAGATTTGATCATTCTTAGAATGTTTGAAGATAACGTAAAGGTC  890

Query  223   CTACGAGTGCACTCTCTGACATTAACCAGTCTTGATATAGACTTTT-ATTTTGGTGAGAA  281
             ||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||| |||  
Sbjct  891   CTACGAGTGCACTCTCTGACACTAACCAGTCTTAATATAGA-TTTTAATTTTGGGGAGGG  949

Query  282   TGATGACATGGTTGATGATTTTGATACAAAACACTCAGAGGTTTTGATTGATGCCCCTCG  341
             ||||||| | ||||||| |||||||| ||||  ||||| ||||||||||||||| |||||
Sbjct  950   TGATGACTTCGTTGATGGTTTTGATAAAAAAGTCTCAGGGGTTTTGATTGATGCACCTCG  1009

Query  342   ACTCAAGTATTTGAAATTCCAAGATGATCTATCGGAGAGTAAAGTCATAACCAATTCGGG  401
             ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct  1010  ACTCAAGTATTTGAAATTCCAAGATGATCTATCGGGGAGTAAAATCATAACCAATTCGGG  1069

Query  402   TTCCTTAGCCAAGGTCAACATTGTTTATGTCTTTAATGAGAATGATTGTGCTGATGTTGT  461
              |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||
Sbjct  1070  CTCCTTAGCCAAGGTCAATGTTGTTTATGTCTTCAATGAGAATGATTGTGCTGATGTTGT  1129

Query  462   CGACTTACCAAGGCGAAATATGGTCCGTAAtttttttATCAGTATCTCGGGAGTTAGAGA  521
              ||| ||||||| |||||||||||||||||||| || | |||||||||||||||||| ||
Sbjct  1130  TGACATACCAAGACGAAATATGGTCCGTAATTTCTTAACCAGTATCTCGGGAGTTAGCGA  1189

Query  522   TATGAAGATCTCTGGGCATTTTGTGGAG  549
             |||||||||||||  |||||||||||||
Sbjct  1190  TATGAAGATCTCTCAGCATTTTGTGGAG  1217


 Score =  104 bits (56),  Expect = 3e-21
 Identities = 70/77 (91%), Gaps = 0/77 (0%)
 Strand=Plus/Plus

Query  26   TGAAAGCGAAATACCGCGAACGGCCGCCGCTAACTTACTTAATTGCTGGAGAGGATCTGA  85
            |||||||||||||| |||||||| ||| |  ||||||||| || ||||||||||||||||
Sbjct  262  TGAAAGCGAAATACGGCGAACGGTCGCAGGGAACTTACTTCATGGCTGGAGAGGATCTGA  321

Query  86   TAAGCAAATTACCTGAT  102
            |||||||||||||||||
Sbjct  322  TAAGCAAATTACCTGAT  338


> AT5G22700.1 | Symbols:  | F-box/RNI-like/FBD-like domains-containing 
protein | chr5:7545516-7547595 REVERSE LENGTH=1583
Length=1583

 Score =  176 bits (95),  Expect = 6e-43
 Identities = 222/282 (79%), Gaps = 14/282 (5%)
 Strand=Plus/Plus

Query  878   GTTTCGCCTCT-GGATTTCTAG-ATT-TCCATAAGGACTCATGCTTACACAAGTTCAAGA  934
             ||||||||||| || ||||| | ||| |||  ||||| ||||||||||||||||||||| 
Sbjct  320   GTTTCGCCTCTCGG-TTTCTTGAATTCTCC--AAGGATTCATGCTTACACAAGTTCAAGC  376

Query  935   TTTTTGGTAAGAGGAAAGATGTTAG-TATGTGTACAATCATGTGGTGGCTCCATA-ATGC  992
             |||  | | ||||| | |||||| | ||||||||||||||||  |||| |||| | | ||
Sbjct  377   TTTCAGTTGAGAGGGATGATGTT-GATATGTGTACAATCATGCCGTGGATCCA-AGACGC  434

Query  993   AGTTAAGCGTAAAATCCGACATCTTGATGTCGAGTGT-TATTTGGAACAGATGATTGATA  1051
              ||||| |||| ||||| ||||||||| ||||| |||   ||  |     ||  ||||  
Sbjct  435   TGTTAATCGTAGAATCCAACATCTTGAAGTCGACTGTCGCTTCAGTTTTCAT-TTTGAGG  493

Query  1052  TGGTGCCTCTAAGCCTTTACTTAAGTGAGACTTTGGTTTCATTGAGACTTAATTGTT-TG  1110
               |||  ||||| ||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct  494   CAGTGTATCTAACCCTTTACTTAAGTGAGACTTTGGTTTCATTGAGACTTCATT-TTGTG  552

Query  1111  GTTCTGGTTTGTTTCGAGTTTGTGTCTTTGCCTAATCTCAAG  1152
                |||  | ||| ||||||||| |||||||| |||||||||
Sbjct  553   ACGCTGCATCGTTACGAGTTTGTATCTTTGCCAAATCTCAAG  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 88001555385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5