BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894149

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22791.2 | Symbols:  | F-box family protein | chr5:7603500-7...   348    4e-95


> AT5G22791.2 | Symbols:  | F-box family protein | chr5:7603500-7604822 
REVERSE LENGTH=1198
Length=1198

 Score =  348 bits (188),  Expect = 4e-95
 Identities = 238/262 (91%), Gaps = 4/262 (2%)
 Strand=Plus/Plus

Query  269   ATTTGTTTGAGAAAGAGAGATCTTTGTGCACCGGACAGATTCATACCGGCGAGGTTATAA  328
             |||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |
Sbjct  860   ATTTGTTTGAAAAAGAGAGATCTTTGTGCACCGGAAAGATTCATACGGGCGAGGTTATGA  919

Query  329   TTGTTTCCAGACCTGCGAGGTTAGAGTCATCTAAGCTC-TTTTGTGTTTACTATTGTGAT  387
             ||||||||| ||||||||||||| |||||| || || | |||| |||| |||||||||||
Sbjct  920   TTGTTTCCACACCTGCGAGGTTAAAGTCATATATGC-CATTTTTTGTTAACTATTGTGAT  978

Query  388   ATGACCAGGGAGGA-TATCAGAAGGTGTGAGATTGATGGTATCGCGGATTATGAGTTTAG  446
             || || ||||| || ||| ||||| |||||||||||||| || |||||||||||||||||
Sbjct  979   ATAACTAGGGA-GAGTATTAGAAGATGTGAGATTGATGGAATTGCGGATTATGAGTTTAG  1037

Query  447   ACGTATCCATGGAATTGGTAAGCGTACTCGTCAATTGTTGTGTTTTCCAGGTCACATTGA  506
             ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct  1038  ACGTATCCATGGAATTGGTAAGCGTACTCGTGAAATGTTGTGTTTTCCAGGTCACATTGA  1097

Query  507   GAATATTATGTTCTTTCAGTAG  528
             ||||||||| |||||||| |||
Sbjct  1098  GAATATTATCTTCTTTCATTAG  1119


 Score =  287 bits (155),  Expect = 8e-77
 Identities = 177/188 (94%), Gaps = 0/188 (0%)
 Strand=Plus/Plus

Query  52   TTCGTTTTCACGCTAAGTTCGGGACAACAAGAGTGGAGAAAGATTGACATAACCGAAGAA  111
            ||||||||||||||||| ||   |||| |||||||||||||||||||||||||| |||||
Sbjct  499  TTCGTTTTCACGCTAAGCTCTCAACAAAAAGAGTGGAGAAAGATTGACATAACCAAAGAA  558

Query  112  GAAGATCCTTACCGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATATACTATGGT  171
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct  559  GAAGATCCTTACCGCCACATGAAAGGTGGGATTTGCATAGATGGTGCTATACACTATGGA  618

Query  172  GTTTTGTATAGAAAGATAGCTAGGTTTGATGTTAGAACCGAGAAGATTGAGTTTATTCAA  231
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  619  GTTTTGTATAGAAAAATAGCTAGATTTGATGTTAGAACCGAGAAGATTGAGTTCATTCAA  678

Query  232  GGACCAGA  239
            ||||||||
Sbjct  679  GGACCAGA  686



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5