BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894150

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22791.2 | Symbols:  | F-box family protein | chr5:7603500-7...   564    5e-160


> AT5G22791.2 | Symbols:  | F-box family protein | chr5:7603500-7604822 
REVERSE LENGTH=1198
Length=1198

 Score =  564 bits (305),  Expect = 5e-160
 Identities = 401/447 (90%), Gaps = 7/447 (2%)
 Strand=Plus/Plus

Query  283  ATGGAAGATTCACAACCTTCTCCGTCAAGTAACCTAAATGACGCCGGAAACTCCACAAAA  342
            |||||||||||||||| |||||| ||| |||||||| || | |||||||||||| ||| |
Sbjct  52   ATGGAAGATTCACAACTTTCTCCCTCACGTAACCTAGATCAAGCCGGAAACTCCTCAACA  111

Query  343  AACATCCCATTTGATCTAACCTTAGAGATACTCTCTAAACTTCCGGCGAAATCC-CTCAT  401
            ||||| || |||||||| || ||||||||| |||| | ||||||||| ||| ||  | ||
Sbjct  112  AACATTCCTTTTGATCTCACATTAGAGATAGTCTCGAGACTTCCGGC-AAAACCTATAAT  170

Query  402  CCGTTTCCAAGCCGTGTCAAAGCTCTGGTTCTCAATTATCCGCAGTAAAGATTTCACTGA  461
            ||| ||||||||||||||||||||||||||||| |  |||||||||||| ||||||| ||
Sbjct  171  CCGGTTCCAAGCCGTGTCAAAGCTCTGGTTCTCTACCATCCGCAGTAAAAATTTCACCGA  230

Query  462  CTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCCTTTTCACCTTCAAGCACTTCGA  521
            ||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct  231  CTCGTTCCTGACTAGGTCAAAGACTCGTCCTCGTCTCTTTTTCACCTTTAAACACTTCGA  290

Query  522  TTCCCGAAAACGTTTCATCTTCTCAGCTCCTGAACACGACAACAATGACAAATCCTCTAC  581
            |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  291  TTCCCGGAAACGTTTCATCTTCTCAGCTCCTGAACGCGACAACAATGACAAATCCTCCAC  350

Query  582  AGTTGTCGCCAGACACGACATGACGATCTCTGATCTCGTCTACTACATCAGATCTCGCCC  641
            |||||||||||||||||||||||||||||| ||| ||| |  |||||||||||||| |||
Sbjct  351  AGTTGTCGCCAGACACGACATGACGATCTCGGATGTCG-C--CTACATCAGATCTCTCCC  407

Query  642  CGTGAACGGTTTCGTCT-GCTGCACGCGTGGTGATTCGATCGCGGTTTGTAATCCAACCA  700
            ||| |||||||| || | ||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  408  CGTCAACGGTTT-GTTTTGCTACACGCGTGGTGATTCGATCGCGGTTTGTAATCCCACCA  466

Query  701  CTAGACAAATAGTGAAATTTCCAGATG  727
            ||||||||||||| ||||| |||||||
Sbjct  467  CTAGACAAATAGTTAAATTGCCAGATG  493



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38981698072


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5