BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894152

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49940.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   113    7e-25


> AT1G49940.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Tetratricopeptide repeat (TPR)-like superfamily protein 
(TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in 
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI 
BLink). | chr1:18488517-18491179 REVERSE LENGTH=994
Length=994

 Score =  113 bits (61),  Expect = 7e-25
 Identities = 68/71 (96%), Gaps = 1/71 (1%)
 Strand=Plus/Plus

Query  32   CAACAAATACTGCGAGATCTCATGGCAAGAAATTTCAGGTCACGGTCGAGAAGAAAACCA  91
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  631  CAACAAATACTGTGAGATCTCATGGCAAGAAATTTCAGGTCACGGTCGAGAAGAAA-CCA  689

Query  92   CTAGGATATTG  102
            ||||||| |||
Sbjct  690  CTAGGATCTTG  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5