BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894153

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22794.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   152    4e-36
  AT1G49940.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   152    4e-36


> AT5G22794.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; BEST Arabidopsis thaliana protein 
match is: Tetratricopeptide repeat (TPR)-like superfamily 
protein (TAIR:AT1G04770.1); Has 146 Blast hits to 146 proteins 
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr5:7608242-7611591 FORWARD LENGTH=714
Length=714

 Score =  152 bits (82),  Expect = 4e-36
 Identities = 87/89 (98%), Gaps = 1/89 (1%)
 Strand=Plus/Plus

Query  423  ATTCAAGTATATTCAGAACCAGAGTCTTCTTGAAGTGGATGAGTCAGACGATGAACCACT  482
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  465  ATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTCAGACGATGAACCACT  524

Query  483  TGACACAAAACAAGATCAGCTCTTTGAAC  511
            ||||||||||||| |||||||||||||||
Sbjct  525  TGACACAAAACAA-ATCAGCTCTTTGAAC  552


> AT1G49940.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Tetratricopeptide repeat (TPR)-like superfamily protein 
(TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in 
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI 
BLink). | chr1:18488517-18491179 REVERSE LENGTH=994
Length=994

 Score =  152 bits (82),  Expect = 4e-36
 Identities = 91/95 (96%), Gaps = 1/95 (1%)
 Strand=Plus/Plus

Query  422  GATTCAAGTATATTCAGAACCAGAGTCTTCTTGAAGTGGATGAGTCAGACGATGAACCAC  481
            |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct  506  GATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTGAGACGATGGACCAC  565

Query  482  -TTGACACAAAACAAGATCAGCTCTTTGAACAAGA  515
             ||||||||||||||||||||||||||||||||||
Sbjct  566  TTTGACACAAAACAAGATCAGCTCTTTGAACAAGA  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5