BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894157
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT5G22820.2 | Symbols: | ARM repeat superfamily protein | chr5... 2178 0.0
> AT5G22820.2 | Symbols: | ARM repeat superfamily protein | chr5:7623440-7626975
REVERSE LENGTH=1902
Length=1902
Score = 2178 bits (1179), Expect = 0.0
Identities = 1476/1613 (92%), Gaps = 46/1613 (3%)
Strand=Plus/Plus
Query 1 ATGGAGGACGAtgaa--g-cgaagcagcgaagaaaacttgaagaagaagaagaagatttt 57
||||| ||||||||| | |||| |||||| ||| ||||||||||||||||||| |||||
Sbjct 33 ATGGAAGACGATGAAGCGACGAAACAGCGAGGAATACTTGAAGAAGAAGAAGAAAATTTT 92
Query 58 ga-t-gaacgaagagaagaaa-tagaaaaCGATTTTCCCTCACATCATCCTCCTCCTCCG 114
| | ||| |||||||||||| | |||||||| |||||||||||||||||||||||||||
Sbjct 93 -ACTGGAA-GAAGAGAAGAAAGT-GAAAACGAGTTTCCCTCACATCATCCTCCTCCTCCG 149
Query 115 CCTGATGAGTTCTTTGACATTTCGACTACAGTTGATCCTAGCTATGTTATTTCACTGATA 174
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 150 CCTGATGAGTTGTTTGACATTTCGACTACAGTTGATCCTAGCTATCTTATTTCACTGATA 209
Query 175 AGGAAACTCCTTCCTGTTGATTCGGGTACTGACGAACGACATAATCATCATATGAATGCG 234
|||||||||||||| |||||||||| | |||||||||||||||| ||||||||||| ||
Sbjct 210 AGGAAACTCCTTCCAATTGATTCGGGAAGTGACGAACGACATAATGATCATATGAATACG 269
Query 235 GATAATGTGGTTCACGGTGTAGTAGCTGTATCTAG-AA-----------ACACTTCCAAT 282
|||||||||||||| |||||||||||| ||||| | || | |||||||||
Sbjct 270 GATAATGTGGTTCAAGGTGTAGTAGCTATATCTGGAAATGGGGTTGTTGAGACTTCCAAT 329
Query 283 GGTGATCCAGAGAGCATGGACATTGAAGATAATCATAATGAATCCACTTCCGAGGTGAGG 342
||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||
Sbjct 330 GGTGATCCAGAGAGCATGGACATTGGAGATAATCATGATGAATCCACTTATGAGGTG-GG 388
Query 343 GG-CACGGTCAGTTCATGTCGGGAGCCGGGAATGCTAGGCGGGTCATCAGTGGAAGAAGC 401
|| ||||| |||||||||| | ||||||||||| || ||||||||| | ||
Sbjct 389 GGAGACGGTTAGTTCATGTCCAGCGCCGGGAATGCAAGACGGGTCATC-------G--GC 439
Query 402 ATGGGAAGATCATGGTTGTGTTTTGTGGGATCTTGCCGCTAGTAGAACTCATGCTGAGCT 461
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 440 ATGGGAAGATCATGGTTGTGTTTTGTGGGATCTTGCCGCCAGTAGAACTCATGCTGAGCT 499
Query 462 AATGGTACAGAACCTAATTTTAGAAGTGCTTCACGCAAACCTTATGGTTTCAACATCTGC 521
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 500 AATGGTACAGAACCTAATTTTAGAAGTGCTTCACGCAAACCTTATGGTTTCAAAATCTCC 559
Query 522 CCGCATTCGAGAAATTTCTCTCGGGATTATTGGGAACCTTGCTTGCCATGAAGGTTTGTT 581
||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 560 CCGTATTCGAGAAATCTGTCTCGGGATTATTAGGAACCTTGCTTGCCATGAAGGTCTGTT 619
Query 582 GAAACATATAGAGTCTACAGCTGGACTCGTAAATATACTCGTGGGGCAGTTGTTTCATGA 641
||||||||||||||||||||| ||| |||| |||| ||| |||||||||||||||| |||
Sbjct 620 GAAACATATAGAGTCTACAGCCGGAATCGTCAATACACTTGTGGGGCAGTTGTTTCTTGA 679
Query 642 TGATACCCAATGCCTAAGTGAAGTTTGCAGGATATTCACTACAGGACTCTATGGGGCTGG 701
|||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |||||
Sbjct 680 TGATACCCAATGCCTAAGTGAAGTTTGCAGGATACTCACCACAGGACTCTCTGGCGCTGG 739
Query 702 GTGCACTTTTTGGGCTGATTGTTTGAAGTCTGATGATATACTTCGCCGTATTTTGTGGAT 761
||| |||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 740 GTGTACTTCCTGGGCCCATTGTTTGGAGTCTGATGATATACTTCGCCATATTTTGTGGAT 799
Query 762 TGCGGAAAATACCTTGAATCCTCATCTTATTGAAAAGAGTGTAGGGCTATTGTTAGGCAT 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 800 TGCGGAAAATACCTTGAATCCTCATCTTATTGAAAAGAGTGTAGGGCTATTGTTAGGTAT 859
Query 822 CATAGAAGGTCAACCAGAGATTGAGCAGCTATTGATCCCCCCACTAATGAATCTGGGTTT 881
||||||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 860 CATAGAAGGTCAACCTGAGGTTGAGCAGCTATTGATTCCTCCACTAATGAATCTGGGTTT 919
Query 882 AACGGGTGTCTTGATCAATCTTCTTTCCGTTGAAATGAGCAAGTTGACTAAAGAGAGAAT 941
||| || ||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 920 GACGAGTCTCTTGATCAATCTTCTTTCATTTGAAATGAGCAAGTTGACTAAAGAAAGAAT 979
Query 942 TCCAGAAAGGTACCCCGTCCTTGAAATTATTCTCCGAGCTATTGAAGCCCTTTCTGCTTC 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 TCCAGAAAGGTACCCCGTCCTTGAAATTATTCTCCGAGCTATTGAAGCCCTTTCTGCTTC 1039
Query 1002 AGATAGCCATTCTAAAGAGATTTGCTCTAGCAAAGAACTTTTTCAACTAGTCTGTGATCT 1061
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1040 AGATAGCTATTCTAAAGAGATTTGCTCTAGCAAAGAACTTTTTCAATTAGTCTGTGATCT 1099
Query 1062 TTTGAAACTTCAGGACAAAACCGAGGTGGCAACATCTTGTGTTACTGCTGGAGTTTTAAT 1121
| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 1100 TATGAAACTTCAGGACAAAGCCGAGGTTGCAACATCTTGTGTTACTACTGGAGTTTTAAT 1159
Query 1122 CGCAAATATGCTGTCGGAAACAGTCGTTTTCATTCCAAAAGTATCGCAAGATTTTTCTTT 1181
||||||||||||||| |||| ||||| |||||||||| |||||| | |||||||||||||
Sbjct 1160 CGCAAATATGCTGTCTGAAAGAGTCGATTTCATTCCAGAAGTATTGGAAGATTTTTCTTT 1219
Query 1182 CTTGGAAGGTTTATTCAGTACTTTACCATTTGCTTCGGATGATGTAGAAGCAAGAAGAGC 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CTTGGAAGGTTTATTCAGTACTTTACCATTTGCTTCGGATGATGTAGAAGCAAGAAGAGC 1279
Query 1242 TCTTTGGAATGTTATTGCGAGATTACTTGCCAGAGTTAATGAATCCGAGATAAACACATT 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CCTTTGGAATGTTATTGCGAGATTACTTGCCAGAGTTAATGAATCCGAGATAAACACATT 1339
Query 1302 C-TGTCTGAGTCAGTACATATTGGTTTTGTTAAGCAAAGCAGATATTATAGAAGATGATC 1360
| | ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1340 CCT-TCTGAGTCAGTACATATTGGTTTTGTTAAGCAACGCAGATATTATTGAAGATGATT 1398
Query 1361 TTCTTGATACCCAACTAGAAGATTCAAACGAGGAGTCCCAAAACTCATTCCCTTCCCAGA 1420
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1399 TTCTTGATACCCAACTAGAAGATTCAAACGAG---TCCCGAAACTCATTCCCTTCCCAGA 1455
Query 1421 TAAAGTCAAGCGCGCGAACAATTGCTCGACAACAGATACGGAAGATTGAATCGATATTGA 1480
||||||||||||| |||||||||||| | | |||| | | | |||||||||||||||
Sbjct 1456 TAAAGTCAAGCGCACGAACAATTGCT--ATA-CAGA-A-G-A---TTGAATCGATATTGA 1506
Query 1481 ACAATTGGAATGTTCGCAAGGAGGATTTCCAGGAGGAAACAGTGAACGAGAATTGCTCTA 1540
|||||||||||| |||||||||| |||| ||||||||||| ||||||| |||||||||||
Sbjct 1507 ACAATTGGAATGCTCGCAAGGAGAATTTACAGGAGGAAACCGTGAACGGGAATTGCTCTA 1566
Query 1541 TAATCCTAGCTGATGTTAAAAGGCTATCCGATTGCTGTCACAGATATATCAAG 1593
||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1567 TAAACCTAGCTGATGTTAAAAGGCTATTCGATTGCTGTCACAGATATATCAAG 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5