BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894175
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23000.1 | Symbols: RAX1, MYB37, ATMYB37 | myb domain protei... 1476 0.0
AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87 |... 161 1e-38
> AT5G23000.1 | Symbols: RAX1, MYB37, ATMYB37 | myb domain protein
37 | chr5:7696135-7697927 FORWARD LENGTH=1304
Length=1304
Score = 1476 bits (799), Expect = 0.0
Identities = 938/1002 (94%), Gaps = 21/1002 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGCTCCATGTTGCGACAAGACAAAAGTGAAGCGAGGGCCTTGGTCGCCTGAG 60
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 100 ATGGGAAGAGCTCCGTGTTGCGACAAGACAAAAGTGAAGCGAGGGCCTTGGTCGCCTGAA 159
Query 61 GAAGACTCTAAACTTAGAGATTACATCGAAAAGTATGGTAATGGTGGAAATTGGATCTCT 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 160 GAAGACTCTAAACTTAGAGATTACATTGAAAAGTATGGTAATGGTGGAAATTGGATCTCT 219
Query 121 CTCCCCCTTAAAGCCGGTTTGAGGAGATGTGGGAAGAGTTGTAGATTGAGGTGGCTAAAC 180
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 220 TTCCCCCTCAAAGCCGGTTTGAGGAGATGTGGGAAGAGTTGTAGACTGAGGTGGCTAAAC 279
Query 181 TATTTGAGACCAAACATAAAACATGGTGACTTCTCTGAGGAAGAAGACAGGATCATTTTT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 280 TATTTGAGACCAAACATAAAGCATGGTGACTTCTCTGAGGAAGAAGACAGGATCATTTTT 339
Query 241 AGCCTCTTCGCTGCCATTGGAAGCAGGTGGTCAATAATAGCAGCTCATCTACCGGGAAGA 300
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 340 AGTCTCTTCGCTGCCATAGGAAGCAGGTGGTCAATAATAGCAGCTCATCTACCGGGACGA 399
Query 301 ACAGACAACGACATCAAAAACTATTGGAACACAAAGCTAAGGAAGAAACTCTTGTCTTCT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 ACAGACAACGACATAAAAAACTATTGGAACACAAAGCTAAGGAAGAAACTCTTGTCTTCT 459
Query 361 TCATCTTCTTCCTCTTATTCACCATCAGCCATGGCTTCT-C--ATCTAAACCCTAATTCT 417
|| | || | | | | ||| ||||||||||||||||| | |||||||||||| ||||
Sbjct 460 TC--C-TC-TGAT-TCA-TCATCATCAGCCATGGCTTCTCCTTATCTAAACCCTATTTCT 513
Query 418 CAGGATGTGAAAAGACCATTAACCCCATCAACAACAATCCCATCTTCTTCTTACAATCCG 477
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 514 CAGGATGTGAAAAGACC---AACCTCACCAACAACAATCCCATCTTCTTCTTACAATCCG 570
Query 478 TATGCTGAAAACCCTAATCACTACCCAACAAAATCACTCATCTCCAGCATCAATGGCTTT 537
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 571 TATGCTGAAAACCCTAATCAATACCCAACAAAATCCCTCATCTCCAGCATCAATGGCTTC 630
Query 538 GAAGCTGATGAAAAACAGAT-TTTTCCCTATATTAGCCCTAATTATCCTCAAGATCCCTC 596
||||||| ||| |||||||| ||| ||||||||| |||||||||||||||||||| ||
Sbjct 631 GAAGCTGGTGACAAACAGATAATTT-CCTATATTAACCCTAATTATCCTCAAGATCTCTA 689
Query 597 TCTCTCGGACAGCAGCAACAACACCTGGGAA-GCAAGTGGTTTCTTGCTCAACCACAATA 655
|||||||||||||| ||||||||||| ||| |||| |||||||||||||||||||||||
Sbjct 690 TCTCTCGGACAGCAACAACAACACCT-CGAACGCAAATGGTTTCTTGCTCAACCACAATA 748
Query 656 TGTGTGATCACTACAACAACCACACCAGTTTTTCCTCAAACGTCAATGGGA-AGAGATCA 714
|||||||||| ||||| ||||||||||||||||| ||| |||||||||||| | ||||||
Sbjct 749 TGTGTGATCAGTACAAGAACCACACCAGTTTTTCTTCAGACGTCAATGGGATA-AGATCA 807
Query 715 GAGATTATGATGAAGCAAGAAGAAACAatgatgatgatgatgatAGACCACCACATTGAC 774
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 808 GAGATTATGATGAAGCAAGAAGAGATAATGATGATGATGATGATAGACCACCACATTGAC 867
Query 775 CAGAGGACAAAAGGGTACAATGGGGATTTCACACAAGGGTATTATAACTACTACACTGGG 834
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 868 CAGAGGACAAAAGGGTACAATGGGGAATTCACACAAGGGTATTATAATTACTACAATGGG 927
Query 835 CATGGGGATTTGAAGCAAATGATTAGTGGAACAGGCACTAATTCTAACATAAACATGGGT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CATGGGGATTTGAAGCAAATGATTAGTGGAACAGGCACTAATTCTAACATAAACATGGGT 987
Query 895 TGTTCAGGTTCATCTTCTAGTTCGATAAGCAACCTAGCTGAGAACAAAAGCAGTAGTAGC 954
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 988 GGTTCAGGTTCATCTTCTAGTTCGATAAGCAACCTAGCTGAGAACAAAAGCAGTGGTAGC 1047
Query 955 CTCCTAC-A-AC-ACAAGTGCTTGCCCTATTTCTACTCCTAG 993
||||||| | | |||| ||||||||||||||||||||||||
Sbjct 1048 CTCCTACTAGAATACAAATGCTTGCCCTATTTCTACTCCTAG 1089
> AT4G37780.1 | Symbols: MYB87, ATMYB87 | myb domain protein 87
| chr4:17758243-17759557 REVERSE LENGTH=1110
Length=1110
Score = 161 bits (87), Expect = 1e-38
Identities = 273/362 (75%), Gaps = 16/362 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGCTCCATGTTGCGACAAGACAAAAGTGAAGCGAGGGCCTTGGTCGCCTGAG 60
||||||||||| || || |||||||||| |||||| |||||| |||||| | |||
Sbjct 32 ATGGGAAGAGCACCGTGCTGCGACAAGATGGCGGTGAAGAAAGGGCCATGGTCGACGGAG 91
Query 61 GAAGACT-CTAAACTTAGAG-ATTACATCGAAAAGTATGGTAATGGTGGA-AATTGGATC 117
||||| | | |||| || |||||||||||| | || | || | || |||||
Sbjct 92 GAAGA-TGCCGTGCTTA-AGTCTTACATCGAAAAACACGGCACCGG-CAACAACTGGATT 148
Query 118 TCTCTCCCCCTTA-AAGCCGGTTTGAGGAGATGTGGGAAGAGTTGTAGATTGAGGTGGCT 176
|| ||||| | | || || | | ||| || |||||||||||| | ||||| |||||
Sbjct 149 TCCCTCCCTCAGAGAA-TTGGGATAAAGAGGTGCGGGAAGAGTTGTCGTTTGAGATGGCT 207
Query 177 AAACTATTTGAGACCAAACATAAAACATGGTGACTTCTCTGAGGAAGAAGA-CAGGATCA 235
|| || ||||| || ||| |||| ||||| | |||| | || |||||||| | ||||
Sbjct 208 TAATTACTTGAGGCCTAACTTAAAGCATGGAGGCTTCACCGATGAAGAAGATTA-CATCA 266
Query 236 TTTTTAGCCTCTT-CGCTGCCATTGGAAGCAGGTGGTCAATAATAGCAGCTC-ATCTACC 293
||| ||||| || | | | ||||||||||||||||| || || || | | || ||||
Sbjct 267 TTTGCAGCCT-TTACATTACTATTGGAAGCAGGTGGTCTATCATTGCTTCACAAT-TACC 324
Query 294 GGGAAGAACAGACAACGACATCAAAAACTATTGGAACACAAAGCT-AAGGAAGAAACTCT 352
||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||| || |
Sbjct 325 GGGAAGAACAGACAACGACATCAAAAACTATTGGAACACGAGGCTGAAG-AAGAAGCTAT 383
Query 353 TG 354
||
Sbjct 384 TG 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5