BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894233
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23490.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 918 0.0
AT5G23510.2 | Symbols: | unknown protein; LOCATED IN: cellular... 905 0.0
> AT5G23490.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G08440.1);
Has 202 Blast hits to 197 proteins in 48 species: Archae -
0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses
- 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr5:7919438-7926628
FORWARD LENGTH=2712
Length=2712
Score = 918 bits (497), Expect = 0.0
Identities = 586/630 (93%), Gaps = 2/630 (0%)
Strand=Plus/Plus
Query 84 TGATGACCTTTTACCAGCTATAGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGACA 143
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 TGATGACCCGTTACCAGGTATAGAGGACCTCCAAATTTCAGGAGAACCTTATCCTGGACA 1961
Query 144 TGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACTACAAGTTGTAACTTTGAGTGGGT 203
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1962 TGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACAACAAGTTGTAATTTTGAGTGGGT 2021
Query 204 ATGTCGTCTAGAAGATGGAACTGTGAATTACATTGATGGAGCAAAACAGCCAAATTACCT 263
|||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 2022 CTGTCACCTAGAAGATGGATCTGTGAATTACATTGATGGAGCAAAGCAGCCAAATTACCT 2081
Query 264 TATCACTGCTGATGATGTTGGTTTATATCTTGCTATTGAGGTTCACCCTTTGGATGACAG 323
| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 2082 TGTCACTGCTGATGATGTTGATTTATATCTTGCTATTGAGGTTCAGCCTTTGGATGACAG 2141
Query 324 GAACCGAAAGGGGGAGCTTGTCAAGGTTTTTGCCAATGATAATCGCAAGATCGCTTGCCA 383
||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 2142 GAACCGAAAGGGGGAGCTTGTGAAGGTTTTTGCCAATGATAACCGCAAGATTGCTTGCCA 2201
Query 384 TCCAGATATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGCTTCATACAAAGT 443
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2202 TCCAGATATGCAGAGCAATATAGAGAAGACTCTTCATACTGGTCATGCTTCATACAAAGT 2261
Query 444 TTTTCTTGCGACGGGTTTCCTGGATAAATGGGAAGCAGCTACGTTATCTATTAAGAGGGA 503
|| ||||||| || ||| |||||| |||||||||||| || |||||||||||||| ||
Sbjct 2262 TTCTCTTGCGGTTGGCTTCGTGGATATATGGGAAGCAGCAACATTATCTATTAAGAGAGA 2321
Query 504 AGGTTACACCATCAAGTGTGATAA-TGATCTCACAATTGCAGAAAATTTCTCAGCTTCTA 562
|||||||| |||||||||| || | ||||||||||||||||||||| |||||||| ||||
Sbjct 2322 AGGTTACAGCATCAAGTGT-ATTAGTGATCTCACAATTGCAGAAAAGTTCTCAGCATCTA 2380
Query 563 CTGCTGTAAAAATTCCGTTTGGGAAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTA 622
|| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2381 CTACTGTAACCATTCCGTTTGGGCAACCGGCAGAACTTGTTATCATTGGTTCTGATGGTA 2440
Query 623 GTGAGCATTCTTTACGAGCAGAGAATGGATTGACAGACCTTGTCGGGTCAAGAGATGAAA 682
|||| ||||| ||||||||||| ||||||| | |||||||| |||| |||||||||||||
Sbjct 2441 GTGAACATTCCTTACGAGCAGATAATGGATCGCCAGACCTTATCGGCTCAAGAGATGAAA 2500
Query 683 TAGTACTCACCCTGAGATTATTTATCAAGA 712
||||||||||||||||||||||||||||||
Sbjct 2501 TAGTACTCACCCTGAGATTATTTATCAAGA 2530
> AT5G23510.2 | Symbols: | unknown protein; LOCATED IN: cellular_component
unknown; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G23490.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7926945-7929338
FORWARD LENGTH=1252
Length=1252
Score = 905 bits (490), Expect = 0.0
Identities = 637/705 (90%), Gaps = 22/705 (3%)
Strand=Plus/Plus
Query 28 GACGAATCTCCACTTATCAGCAAGAC---CG---A--A-ACCAAAGATTTCTTCT-TTTT 77
|||||| |||||| |||||||||||| || | | |||||| || |||||| ||||
Sbjct 276 GACGAAACTCCACCTATCAGCAAGACGGTCGTCAACGATACCAAAAATATCTTCTATTTT 335
Query 78 --TGA--GGG-TGATGACCTTTTACCAGCTATAGAGGACCTCCAAATTTCAGGAGAACCT 132
||| ||| ||||| || ||||||||| ||||| |||||||||||||||||||||||
Sbjct 336 GATGATGGGGATGATGCCCCCTTACCAGCTTTAGAGAACCTCCAAATTTCAGGAGAACCT 395
Query 133 TATCCTGGACATGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACTACAAGTTGTAAC 192
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 396 TATCCTGGACATGAACTTCAGGCTTGTGGTTACTCCATTAATGGAACAACAAGTTGTAAT 455
Query 193 TTTGAGTGGGTATGTCGTCTAGAAGATGGAACTGTGAATTACATTGATGGAGCAAA-ACA 251
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 456 TTTGAGTGGGTATGTCATCTAGAAGATGGATCTGTGAATTACATTGATGGAGCAAAGA-A 514
Query 252 GCCAAATTACCTTATCACTGCTGATGATGTTGGTTTATATCTTGCTATTGAGGTTCACCC 311
||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 515 GCCAAATTACCTTGTCACTGCTGATGATGTTGGTTTATGTCTTGCTATTGAAGTTCAGCC 574
Query 312 TTTGGATGACAGGAACCGAAAGGGGGAGCTTGTCAAGGTTTTTGCCAATGATAATCGCAA 371
|||||||||| ||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 575 TTTGGATGACCGGAACCGGAAGGGAGAGCTTGTGAAGGTTTTTGCCAATGATAATCGCAA 634
Query 372 GATCGCTTGCCATCCAGATATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGC 431
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GATCGCTTGCCATCCAGAGATGCAGAGCAATATAGACAAGACTCTTCATACTGGTCATGC 694
Query 432 TTCATACAAAGTTTTTCTTGCGACGGGTTTCCTGGATAAATGGGAAGCAGCTACGTTATC 491
|||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||||
Sbjct 695 TTCATACAAAGTTTCTCTTGCGATTGGTTTCGTGCATATATGGGAAGCAGCTACGTTATC 754
Query 492 TATTAAGAGGGAAGGTTACACCATCAAGTGTGATAATGATCTCACAATTGCAGAAAATTT 551
|||| |||| ||||||||||||||||||||| |||| |||||||||||| ||||||| ||
Sbjct 755 TATTGAGAGAGAAGGTTACACCATCAAGTGTAATAACGATCTCACAATTACAGAAAAGTT 814
Query 552 CTCAGCTTCTACTGCTGTAAAAATTCCGTTTGGGAAACCGGCAGAACTTGTTATCATTGG 611
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 815 CTCAGCTTCTACTGCTGTAAAAATTCCGTTTGAGAAACCTGCAGAACTTGTTATCATTGG 874
Query 612 TTCTGATGGTAGTGAGCATT-CTTTACGAGCAGAGAATGGATTGACAGACCTTGTCGGGT 670
||||||||||||||| |||| ||| ||||| ||| |||| || | ||||| | | | |
Sbjct 875 TTCTGATGGTAGTGAACATTGCTT-ACGAGTAGATAATGAATGGCCAGACAT---CAGCT 930
Query 671 CAAGAGATGAAATAGTACTCACCCTGAGATTATTTATCAAGACGG 715
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 931 CAAGAGATGAAATAGTACTCACCCTGAGATCATTTATCAAGACGG 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5