BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894246
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23650.1 | Symbols: | Homeodomain-like transcriptional regu... 1210 0.0
AT5G08520.1 | Symbols: | Duplicated homeodomain-like superfami... 159 3e-38
> AT5G23650.1 | Symbols: | Homeodomain-like transcriptional regulator
| chr5:7969812-7971019 FORWARD LENGTH=1014
Length=1014
Score = 1210 bits (655), Expect = 0.0
Identities = 895/1006 (89%), Gaps = 36/1006 (4%)
Strand=Plus/Plus
Query 12 ACAGAAAACAAGTGTTGGTTCATCTTGGAACAAGGATGATGATATTGCTTTCGAGAGAGC 71
|||| ||| ||||| || || ||||||| |||||||||||||||||||||||||| |||
Sbjct 12 ACAGGAAATTAGTGTCGGATCGTCTTGGAGCAAGGATGATGATATTGCTTTCGAGAAAGC 71
Query 72 CCTTGCAATTTATAACGATAAAACAGAGATTCGTTGGaaaaaaaTTGCAACAGTTGTTCC 131
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 72 CCTTGCAATTTATAACGATAAAACAGAGATTCGTTGGAAAAAAATTGCTACAGTTGTTCC 131
Query 132 TGGAAAAACTTTAGAACAAGTTATAGAGCATTACAATATTTTAGCTCGTGATGTTATGTT 191
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 132 GGGAAAAACTTTAGAACAAGTTATAGAGCATTACAACATTTTAGCTCGTGATGTTATGTT 191
Query 192 GATTGAATCTGGATGTATACCTCTTCCTGATTATGA--A-TTTTCAGAAGAACCAAATCA 248
|||||||||||||||| ||| |||||| |||||||| | |||| |||||||||||||||
Sbjct 192 GATTGAATCTGGATGTGTACGTCTTCCAGATTATGATGATTTTTTAGAAGAACCAAATCA 251
Query 249 GGATGCTAGTGATAAAGAAAGAAGCATATTGGAAGGTGGCAACAATCGTAAATGCGAGTT 308
||||| || ||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 252 CAATGCTTTTGGTAAAGAAAGAAGCATATTGGAAGGTGGCAACGATCGCAAATATGAGTC 311
Query 309 TAAGCACAAAGGTAAATCAAAACTAAAGCAAAAACGACGAAAGGGG-ATTCCTTGGACTT 367
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 312 TAAACACAAAGGTAAATCAAAACTAAAGCAAAAACGACG-AAGGGGTGTTCCTTGGAAGC 370
Query 368 CAATTGAACACAGACAATTTTTGCTTGGTTTGAAAAAATATGGGAAAGGTGATTGGCGTA 427
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 371 CTTTTGAACACAGACAATTTCTGCATGGTTTGAAAAAATATGGGAAAGGTGATTGGCGTA 430
Query 428 GCATTTCTCGCCACTGCGTGGTGACAAGAACATCAACTCAGGTTGCAAGTCATGCTCAAA 487
| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GTATTTCTCGTCACTGTGTAGTGACAAGAACATCAACTCAGGTTGCAAGTCATGCTCAAA 490
Query 488 AATACTTTGCACATATCAACTCAAAAGATAAGaaaaa-aaaGAGGCCAAGCATTCATGAC 546
||||||||||||||||||||||| | ||||| ||| | ||||||||||||||||||||||
Sbjct 491 AATACTTTGCACATATCAACTCAGAGGATAA-AAAGAGAAAGAGGCCAAGCATTCATGAC 549
Query 547 ATCACCGTTGTGGAAAA-A-------C--AA-AAA-C-----C-AATCACATGGCAAAAC 588
||||| ||| |||||| | | || ||| | | |||||||||||||||
Sbjct 550 ATCACTATTGCGGAAAACAAAAGTATCTCAACAAAACAAAGACCAATCACATGGCAAAAA 609
Query 589 AGAAACATCAATGGTGCTACTACTTCCAACACTCAAGCCAATCAAACCACTTTGCAACAA 648
| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 610 ATAAACAACAATGGTGCTACTGCTTCCAACACTCAAGCCAATCAAACCACTTTGCAACCA 669
Query 649 TCACTAAACCTTCCTATATATG--ACAGACC-CAACATATGGAATACACAAGCTACTCAA 705
||||| || |||||||||||| ||| || ||||||||||||| ||||||| ||||||
Sbjct 670 TCACTTGACATTCCTATATATGGTACACACAACAACATATGGAATGCACAAGCCACTCAA 729
Query 706 GCCATTTCACAACCATCACGAAACCATCCTACATATGGTGCATCCACCACATGGAACACA 765
| ||||||||| ||||||| ||||||||||||||||| |||| ||| || ||||||||||
Sbjct 730 GTCATTTCACAGCCATCACAAAACCATCCTACATATGATGCACCCATCATATGGAACACA 789
Query 766 CAAGCCGCTTTGCAACCATCAGCCAATATTCCTATGTATGGAACGTCCACCATAAGCCAA 825
|||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 790 CAAGTCGCTTCGCAACCATCGGCCAATATTCCTATGTATGGAACGTCCACCATAAGTCAA 849
Query 826 CCAATGGTTGGACCAATGCTCTCAACTTTTGGAACAAACCTGAACCG-TATGGCTCCACC 884
|||||||||||||||||||||||| |||||||||||||| |||||| | |||||||| |
Sbjct 850 CCAATGGTTGGACCAATGCTCTCACCTTTTGGAACAAACTTGAACCACT-TGGCTCCATC 908
Query 885 TCACATGACTTCTGGAGTTCAACAT-A---A--ACCTTACTACTCGGGTCCTAGTGCACC 938
||| ||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 909 TCATATGACTTCTGGAGTTCAACATGATTCAGTACCTTACTACTCAGGTCCTAGTGCACC 968
Query 939 AATCAACATGGATTCAATTCCATACAACATTGACTTATATAACTAG 984
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 969 GATCAACATGGATTCAATACCATACAACATTGACTTATATAACTAG 1014
> AT5G08520.1 | Symbols: | Duplicated homeodomain-like superfamily
protein | chr5:2755175-2758362 REVERSE LENGTH=1813
Length=1813
Score = 159 bits (86), Expect = 3e-38
Identities = 363/492 (74%), Gaps = 37/492 (8%)
Strand=Plus/Plus
Query 22 AGTGTTGGTTCATCT-TGGAACAAGGATGATGATATTG-CTTTCGAGAGAGCCCTTG-CA 78
|||| |||||| | | |||| | ||| |||||||||| |||| |||||||| || | ||
Sbjct 640 AGTGATGGTTC-TGTGTGGAGTAGGGAGGATGATATTGCCTTT-GAGAGAGCTCTAGCCA 697
Query 79 ATTTATAACGATAAAACAGA-GATTCGTTGGaaaaaaaTTGCAACAGTTGTTCCTGGAAA 137
| | ||| |||| || |||| || || ||| | || ||||| ||| ||||| || ||
Sbjct 698 A-TAATACCGATGAATCAGAGGA-ACGGTGGGAGAAGATTGCTGCAGACGTTCCAGGCAA 755
Query 138 AACT-TTAGAACAAG-TTATAGAGCATTACAATATTTTAGCTCG-TGATGTTATGT-TGA 193
|| | || |||| || ||| ||| |||||| | |||||| | | ||||||| | ||
Sbjct 756 AAGTGTT-GAAC-AGATTAAAGAACATTACGAGCTTTTAG-TTGAAGATGTTA-CTAGGA 811
Query 194 TTGAATCTGGATGTATACCTCTTCCTGATTATGAATTTTCAGAAGAACCAAATCAGG--A 251
||||||| |||||| | |||||||||| |||| | | | |||| | | ||| || |
Sbjct 812 TTGAATCAGGATGTGTGCCTCTTCCTGCCTATGGGTCTCCTGAAGGATCGAAT--GGCCA 869
Query 252 TGCTAGTGATAAAGAAAG-AAGCA-TATTGGAAGGTGGCAACAATCGTAAATGCGAGTTT 309
|||| ||||| ||| || ||| | || | |||| || |||| || | | |||| |
Sbjct 870 TGCTGGTGATGAAG-GAGCAAGTAGTA-AGAAAGGAGGTAACAGTCATGCGGGAGAGTCT 927
Query 310 AAGCACAA--AGGTAAATCAAAACT-AAAGCAAAAACGACGAAAGGGGATTC-CTTGGAC 365
|| | ||| ||||||||| ||| | | ||| ||||||||||||| | || | |||||
Sbjct 928 AA-C-CAAGCAGGTAAATC-AAAGTCCGATCAAGAACGACGAAAGGGTA-TCGCGTGGAC 983
Query 366 TTCAA-TTGAACACAGACAATTT-TTGCTTGGTTTGAAAAAATATGGGAAAGGTGATTGG 423
|| ||| ||||| |||| || ||||||||| | || || |||||||||||||||
Sbjct 984 -AGAAGATGAGCACAGGTTATTTCTT-CTTGGTTTGGATAAGTACGGGAAAGGTGATTGG 1041
Query 424 CGTAGCATTTCTCGCCACTGCGTGGTGACAAGAACATCAACTCAGGTTGCAAGTCATGCT 483
||||||||||||||| ||| || || ||||||||| | || || ||||| || ||||||
Sbjct 1042 CGTAGCATTTCTCGCAACTTTGTAGTAACAAGAACACCGACCCAAGTTGCGAGCCATGCT 1101
Query 484 CAAAAATACTTT 495
||||| || |||
Sbjct 1102 CAAAAGTA-TTT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5