BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894259
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23790.1 | Symbols: AtGolS5, GolS5 | galactinol synthase 5 |... 1382 0.0
AT4G26250.1 | Symbols: AtGolS6, GolS6 | galactinol synthase 6 |... 1266 0.0
AT5G30500.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 604 4e-172
> AT5G23790.1 | Symbols: AtGolS5, GolS5 | galactinol synthase 5
| chr5:8020104-8021597 REVERSE LENGTH=1081
Length=1081
Score = 1382 bits (748), Expect = 0.0
Identities = 926/1010 (92%), Gaps = 19/1010 (2%)
Strand=Plus/Plus
Query 10 ATGACGATGACCGTCGAGAAGAGGATCGAAACTGACG-T--GGTGAGCC-TCGGCGGTGT 65
||||||||||| |||||||||||||||||| |||||| | |||||||| | | |||||
Sbjct 1 ATGACGATGACTGTCGAGAAGAGGATCGAAGCTGACGTTACGGTGAGCCAT-GAAGGTGT 59
Query 66 GAAAAGGGCTTACGTCACTTTCCTCGCCGGAAACAAAGACTACTGGATGGGTGTGGTTGG 125
| || |||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 60 GGAACGGGCTTACGTAACTTTCCTCGCCGGAAACAAAGACTACTGGATGCTTGTAGTTGG 119
Query 126 TCTAGCCAAAGGACTTCGTAAGGTAAAATCAGCTTATCCTCTCGTGGTGGCGACTCTCCC 185
|||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct 120 TCTAGCCAAAGGTCTTCGTAAAGTGAAATCAGCTTATCCACTCGTTGTGGCGACTCTCCC 179
Query 186 TGACGTGCCTGAGGAACACCGTCAAATCCTGGTGGCTCAAGGATGCATCATCCGTGACAT 245
|||||||||||||||||| ||||||||| | |||| ||| ||||||||||||||||||||
Sbjct 180 TGACGTGCCTGAGGAACATCGTCAAATCTTAGTGGATCAGGGATGCATCATCCGTGACAT 239
Query 246 CAAACCCGTTTATCCTCCGGA-AA-ACGAAACCGGTTATTCCATGGCTTATTACGTTATC 303
| |||| || ||||||||||| || ||| ||||||||||| ||||||||||||||||||
Sbjct 240 CGAACCGGTCTATCCTCCGGAGAACACG--ACCGGTTATTCTATGGCTTATTACGTTATC 297
Query 304 AACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAGAAAATGATATATCTAGAT 363
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 298 AACTACTCCAAACTTCGTATTTGGGAGTTTGTGGAGTATGAGAAGATGATATATCTAGAT 357
Query 364 GGAGACATACAAGTGTTT-AGTAACATTGATCATCTTTTCGATACTCCTCGTGGCTACTT 422
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGAGACATACAAGTGTTTAAG-AACATTGATCATCTTTTCGATACTCCTCGTGGCTACTT 416
Query 423 GTACGCCGTGAAAGATTGCTTTTGCGAGGTATCTTGGTCTAAAACTCCTCAATACAAGAT 482
|||||| || ||||| |||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 417 GTACGCAGTCAAAGACTGCTTTTGTGAGGTGTCTTGGTCCAAAACTCCTCAATACAAGAT 476
Query 483 CGGTTACTGCCAACAGTCGCCTAAAAAAGTGACTTGGCCTGTTGAAAGCCTCCGTGCGCC 542
|||||| ||||||||||| ||| |||| || ||||||||||||||||| | |||| ||
Sbjct 477 CGGTTATTGCCAACAGTCACCTGAAAAGGTAACTTGGCCTGTTGAAAGTTTAGGTGCTCC 536
Query 543 ACCGCCGGTATATTTCAATGCTGGTATGTTGGTTTTTGAACCAAATCTTATCACTTATGA 602
|||||||||||||||||| || |||||||||||||||| |||||||||| ||||||| ||
Sbjct 537 ACCGCCGGTATATTTCAACGCCGGTATGTTGGTTTTTGGACCAAATCTTGTCACTTACGA 596
Query 603 GGATCTCCTTCGTGTTGTTCAAATCACTACTCCAACTTATTTTGCCGAACAGGACTTTTT 662
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 597 GGATCTCCTTCGTGTTGTTCAAATCACCACTCCAACTTATTTTGCCGAGCAGGACTTTCT 656
Query 663 GAATGTGTACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTC-CCA-GGC 720
|||| | ||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 657 GAATATATACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTCGTAATGG- 715
Query 721 CCTATGCTTTGGCGTCA-CCCTGAACACATTGACCTTGACCAAATCAGTGTTGTTCACTA 779
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 716 -CTATGCTTTGGCGTCATCCC-GAACACATTGACCTTGACCAAATCAGTGTTGTTCACTA 773
Query 780 TTGTGCTAATGGTTCGAAGCTTTGGAGATTCGATGGAGCTGAAGAGCACATGGATCGAGA 839
|||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||
Sbjct 774 TTGTGCTAATGGTTCGAAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGAGA 833
Query 840 AGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 AGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTA 893
Query 900 CAAGAATTTTGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTTGGCTTCCAA 959
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CAAGAATTTCGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTTGGCTTCCAA 953
Query 960 GGAATCT-GTTGGTGATGCCCTAACGAGCCTTGCCCCCTCTGCCGCATAA 1008
| || || ||||| |||| |||||| ||||||||||| || |||||||||
Sbjct 954 GAAA-CTTGTTGGCGATGTCCTAACAAGCCTTGCCCCTTCCGCCGCATAA 1002
> AT4G26250.1 | Symbols: AtGolS6, GolS6 | galactinol synthase 6
| chr4:13289641-13291084 FORWARD LENGTH=1042
Length=1042
Score = 1266 bits (685), Expect = 0.0
Identities = 910/1018 (89%), Gaps = 17/1018 (2%)
Strand=Plus/Plus
Query 1 ATGGCCCAAATGACGATGACCGTCGAGAAGAGGATCGAAA-CTGACGT---GGTGAGCC- 55
||||| |||||| ||||||||||||||||||| ||| ||| ||||||| ||||||||
Sbjct 1 ATGGCTCAAATGTCGATGACCGTCGAGAAGAGTATC-AAAGCTGACGTGACGGTGAGCCA 59
Query 56 TCGGCGGTGTGAAAAGGGCTTACGTCACTTTCCTCGCCGGAAACAAAGACTACTGGATGG 115
| | | |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 60 T-GACCGTGTGAAAAGGGCTTACGTCACTTTCCTTGCTGGAAACAAAGACTACTGGATGG 118
Query 116 GTGTGGTTGGTCTAGCCAAAGGACTTCGTAAGGTAAAATCAGCTTATCCTCTCGTGGTGG 175
|||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 119 GTGTAGTTGGTCTAGCCAAGGGACTTCGTAAGGTGAAATCTGCTTATCCTCTTGTGGTTG 178
Query 176 CGACTCTCCCTGACGTGCCTGAGGAACACCGTCAAATCCTGGTGGCTCAAGGATGCATCA 235
||| |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 179 CGATTCTCCCGGACGTGCCTGAGGAACACCGTCAAATCCTGTTGGCTCAGGGATGCATCA 238
Query 236 TCCGTGACATCAAACCCGTTTATCCTCCGGAAAACGAAACCGGTTATTCCATGGCTTATT 295
||||||| || |||| |||||||| ||||||||| ||||||||||||| ||||| ||||
Sbjct 239 TCCGTGAGATTGAACCGGTTTATCCACCGGAAAACAAAACCGGTTATTCAATGGCCTATT 298
Query 296 ACGTTATCAACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAGAAA-ATGATA 354
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 299 ACGTTATCAACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGA-AAAGATGATT 357
Query 355 TATCTAGATGGAGACATACAAGTGTTTAGTAACATTGATCATCTTTTCGATACTCCTCGT 414
||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 358 TATCTAGATGGAGACATTCAAGTATTTAGTAACATCGATCATCTTTTCGATACTCCTCGT 417
Query 415 GGCTACTTGTACGCCGTGAAAGATTGCTTTTGCGAGGTATCTTGGTCTAAAACTCCTCAA 474
|||||||||||||| || |||||||||||||||||| | |||||||| ||||||||||||
Sbjct 418 GGCTACTTGTACGCTGTCAAAGATTGCTTTTGCGAGATTTCTTGGTCCAAAACTCCTCAA 477
Query 475 TACAAGATCGGTTACTGCCAACAGTCG-CCTAAAAAAGTGACTTGGCCTGTTGAAAGCCT 533
| ||||| |||||||||||||| | | ||| |||| ||||| |||||||||||||| ||
Sbjct 478 TTTAAGATAGGTTACTGCCAACAAT-GTCCTGAAAAGGTGACATGGCCTGTTGAAAGTCT 536
Query 534 CCGTGCGCCACCGCCGGTATATTTCAATGCTGGTATGTTGGTTTTTGAACCAAATCTTAT 593
|| | |||||||||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 537 TGGTTCTCCACCGCCGGTATATTTCAACGCCGGTATGTTGGTTTTTGAACCTAATCTCCT 596
Query 594 CACTTATGAGGATCTCCTTCGTGTTGTTCAAATCACTACTCCAACTTATTTTGCCGAACA 653
|||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 597 CACTTACGAGGATCTCCTTCGTGTTGTTCAAATCACCACTCCGACATATTTTGCCGAACA 656
Query 654 GGACTTTT-TGAATGTGTACTTCAGAGACATTTACAAGCCAATCCCTTCGACCTACAACC 712
||| |||| |||||| ||||| | ||||||||||||||| |||||||||||||||||||
Sbjct 657 GGA-TTTTCTGAATGAATACTTTACAGACATTTACAAGCCCATCCCTTCGACCTACAACC 715
Query 713 TCCCA--GGCCCTATGCTTTGGCGTCACCCTGAACACATTGACCTTGACCAAATCAGTGT 770
| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 716 TTGTAATGGC--TATGCTTTGGCGTCATCCTGAACACATTGACCTTGACCAAATCAGTGT 773
Query 771 TGTTCACTATTGTGCTAATGGTTCGAAGCTTTGGAGATTCGATGGAGCTGAAGAGCACAT 830
| |||| |||||||| ||||||||||||| |||||||||||||| | |||||||||| ||
Sbjct 774 TATTCATTATTGTGCAAATGGTTCGAAGCCTTGGAGATTCGATGAAACTGAAGAGCATAT 833
Query 831 GGATCGAGAAGACATAAAAATGTTGGTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAG 890
|||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 834 GGATCGTGAGGACATAAAAATGTTGGTGAAGAAATGGTGGGATATTTATGAAGATTCGAG 893
Query 891 TTTAGACTACAAGAATTTTGTCGAGACTGAGTCCAAGCTGAATCCGGTCACTGCAACCTT 950
|||||| |||||||| |||||||||||||||||||| |||| |||| ||| |||||||||
Sbjct 894 TTTAGATTACAAGAACTTTGTCGAGACTGAGTCCAAACTGAGTCCGATCAATGCAACCTT 953
Query 951 GGCTTCCAAGGAATCTGTTGGTGATGCCCTAACGAGCCTTGCCCCCTCTGCCGCATAA 1008
||||||||||||||||||||| |||| ||| | || |||||||| || || ||||||
Sbjct 954 GGCTTCCAAGGAATCTGTTGGCGATGTCCTTATTAGTCTTGCCCCTTCCGCTGCATAA 1011
> AT5G30500.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr5:11615345-11616926 FORWARD LENGTH=987
Length=987
Score = 604 bits (327), Expect = 4e-172
Identities = 510/597 (85%), Gaps = 18/597 (3%)
Strand=Plus/Plus
Query 67 AAAAGGGCTTACGTCACTTTCCTCGCCGGAAACAAAGACTACTGGATGGGTGTGGTTGGT 126
||||||||||||||||||||||| || || ||| ||||||| ||||||||||||||||||
Sbjct 70 AAAAGGGCTTACGTCACTTTCCTAGCTGGTAACCAAGACTATTGGATGGGTGTGGTTGGT 129
Query 127 CTAGCCAAAGGACTTCGTAAGGTAAAATCAGCTTATCCTCTCGTGGTGGCGACT-CTCCC 185
||||||| |||||||||||||| ||| ||||||||||||| || ||||| | | |||||
Sbjct 130 TTAGCCAAGGGACTTCGTAAGGTGAAAGCAGCTTATCCTCTTGTTGTGGCTA-TGCTCCC 188
Query 186 TGACGTGCCTG-AGGAACACCGTCAAATCCTGGTGGCTCAAGGATGCATCATCCGTGACA 244
||||| || | | ||||||||||||||| |||||||||||||||| |||||||| || |
Sbjct 189 AGACGTACC-GAAAGAACACCGTCAAATCTTGGTGGCTCAAGGATGTATCATCCGGGAGA 247
Query 245 TCAAACCCGTTTATCCTCCGGAAAACGAAACCGGTTATTCCATGGCTTATTACGTTATCA 304
| |||| |||||||| ||||||||| || | |||||| | |||||||||||||||||||
Sbjct 248 TTGAACCGGTTTATCCGCCGGAAAACCAAGCTGGTTATGCTATGGCTTATTACGTTATCA 307
Query 305 ACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAGAAAATGATATATCTAGATG 364
|||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||
Sbjct 308 ACTACTCCAAGCTTCGAATTTGGGAGTTTGTGGAATATGAGAAGATGATATATTTAGATG 367
Query 365 GAGACATACAAGTGTTTAGTAACATTGATCATCT-TTTCGATACTCC-TCGTGGCTACTT 422
||||||||||||||||||| ||||| |||||||| ||| || ||||| || |||||||||
Sbjct 368 GAGACATACAAGTGTTTAGCAACATCGATCATCTATTT-GACACTCCATC-TGGCTACTT 425
Query 423 GTACGCCGTGAAAGATTGCTTTTGCGAGG-TATCTTGGTCTAAAACTCCTCAATACAAGA 481
||||||||| ||||| || |||||||||| | |||||||| ||||| |||||||||||||
Sbjct 426 GTACGCCGTCAAAGACTGTTTTTGCGAGGGT-TCTTGGTCAAAAACACCTCAATACAAGA 484
Query 482 TCGGTTACTGCCAACAGTCGCCTAAAAAAGTGACTTGGCCTGTTGAA-AGCCTCCGTGC- 539
| |||||||||||||||||||| ||||||||| ||||| | |||| || || || |
Sbjct 485 TTGGTTACTGCCAACAGTCGCCCGAAAAAGTGAGGTGGCC-GATGAACAGTCTTGGT-CA 542
Query 540 -GCCACCGCCGGTATATTTCAATGCTGGTATGTTGGTTTTTGAACCAAATCTTATCACTT 598
| ||||| | |||||||| || ||||||||||| |||||||||||||| ||||||
Sbjct 543 TGTG-CCGCCATTGTATTTCAACGCGGGTATGTTGGTCTTTGAACCAAATCTCCTCACTT 601
Query 599 ATGAGGATCTCCTTCGTGTTGTTCAAATCACTACTCCAACTT-ATTTTGCCGAACAG 654
| |||||||| |||| ||||||| |||| ||||| |||| ||| |||||||||
Sbjct 602 ACGAGGATCTTCTTCAAACTGTTCAAGTCACCACTCCTACTTCATTC-GCCGAACAG 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5