BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894266

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53550.1 | Symbols:  | FBD-like domain family protein | chr3...   154    1e-36


> AT3G53550.1 | Symbols:  | FBD-like domain family protein | chr3:19856870-19858308 
FORWARD LENGTH=771
Length=771

 Score =  154 bits (83),  Expect = 1e-36
 Identities = 237/308 (77%), Gaps = 24/308 (8%)
 Strand=Plus/Plus

Query  506  TTGAAGAGGA-TTTCTCACTTTCATGGAACGAACCAAGTTTTGTTCCCGGATG-TT-TCG  562
            ||||| |||| || | |||||||||||||| |||| |||| |||||||| ||| || || 
Sbjct  470  TTGAAAAGGAGTTGC-CACTTTCATGGAACCAACCGAGTTCTGTTCCCGAATGTTTGTC-  527

Query  563  CAGCCCATCTCAAGATCTTTGAATGGAAAGGATATATAGGACGACACAAAGAGAAAGAAG  622
            ||  |||||||||||| || || |||||||||||||  ||| || |  | ||||||||| 
Sbjct  528  CA-ACCATCTCAAGATATTCGAGTGGAAAGGATATAGGGGAAGAAAGGAGGAGAAAGAAA  586

Query  623  CCATAAAATATATCTTTGCCAACTCCAATTGTTT-AGAGAGAGTTCAAGT-TTCTATGGA  680
             | |   ||| ||| |||||||||| || ||||| || |||| ||  ||| | || || |
Sbjct  587  TCGTGCGATACATCCTTGCCAACTCTAAGTGTTTAAG-GAGAATTGGAGTCTCCT-TGAA  644

Query  681  ATCAACATGCAAGCTTAAAGATAGAGAGAAGATGATGAAAGAGTTAGAATCTATGTCTAG  740
            ||||||   ||| |  ||  ||      |||| ||| |||||||||||||||||||||||
Sbjct  645  ATCAAC---CAA-C--AACCAT------AAGACGATCAAAGAGTTAGAATCTATGTCTAG  692

Query  741  GGTTTCCACGTCATCCCAACTACTTTTCTCCACTCAATTGGAATTTCCGAGCTTTTTA-A  799
            |||||| || |||||||| || || |||||||||||||| |||| |  |||| ||  | |
Sbjct  693  GGTTTCGACATCATCCCATCTTCTATTCTCCACTCAATTTGAATATATGAGCGTTG-ACA  751

Query  800  ATGAAATA  807
            ||||||||
Sbjct  752  ATGAAATA  759



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39584507836


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5