BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894268

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the...   388    1e-107


> AT1G02280.1 | Symbols: TOC33, ATTOC33, PPI1 | translocon at the 
outer envelope membrane of chloroplasts 33 | chr1:448463-450425 
REVERSE LENGTH=1173
Length=1173

 Score =  388 bits (210),  Expect = 1e-107
 Identities = 283/317 (89%), Gaps = 9/317 (3%)
 Strand=Plus/Plus

Query  1    ATGGGTTTAGGGCTTCAGCAATTTCCAG-TGTCTACCCAGGAAAAGCTGATTGAATTCTT  59
            ||||| || ||| |||||||||||||||  | |||||||||||||||||||||||||| |
Sbjct  98   ATGGG-TT-GGGTTTCAGCAATTTCCAGCAG-CTACCCAGGAAAAGCTGATTGAATTC-T  153

Query  60   TCTTCGAATTGCAGGATATGAACTCAAT-TACTCAATGACTGCTCTTGTTCTGGGTAAAG  118
            ||    ||||| || | | | | |  ||  |||||||||| | |||||||||||||||||
Sbjct  154  TCGGAAAATTGAAGCAAAAGGA-T--ATGAACTCAATGACAGTTCTTGTTCTGGGTAAAG  210

Query  119  GCGGTGTCGGAACATCATCCACTGTCAATTCTCTTATCGGCGAACAAGTCGTCCGTGTCA  178
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  211  GCGGTGTCGGAAAATCATCCACTGTCAATTCTCTTATCGGCGAACAAGTCGTCCGTGTCA  270

Query  179  GTCCTTTCCAGGCTGAAGGATTGAGACCAGTGATGGTTTCAAGAACTATGGAAGGATTCA  238
            |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct  271  GTCCTTTCCAAGCTGAAGGATTGAGACCAGTGATGGTTTCAAGAACAATGGGAGGGTTCA  330

Query  239  CTATCAACATTTTTGATATCCCTGGACTTTTGGAAGCTGGATATGTCAATCACCAAGCCC  298
            ||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||| |
Sbjct  331  CTATCAACATTATTGACACCCCTGGACTTGTGGAAGCTGGATATGTCAATCACCAAGCTC  390

Query  299  TCGAGTTAACCAAAGGG  315
            ||||||||| |||||||
Sbjct  391  TCGAGTTAATCAAAGGG  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5