BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894287
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63840.1 | Symbols: RSW3, PSL5 | Glycosyl hydrolases family ... 490 5e-138
> AT5G63840.1 | Symbols: RSW3, PSL5 | Glycosyl hydrolases family
31 protein | chr5:25545056-25549199 FORWARD LENGTH=3043
Length=3043
Score = 490 bits (265), Expect = 5e-138
Identities = 299/315 (95%), Gaps = 4/315 (1%)
Strand=Plus/Plus
Query 1 AGGAGATGCAAAAGAATTTGGCAGGAAAAGGGTAGGAAGATGGTGACCATTGTGGATCCT 60
|||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1259 AGGAGATGCAAAAGAAATTGGC-TGCAAAGGGTAGGAAGATGGTGACCATTGTGGATCCT 1317
Query 61 CATATCAAGAGGGATGACTCATACTTCTTACACAAGGAGGCTACTCGGATGGGATACTAT 120
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1318 CATATCAAGAGGGATGACTCATACTTCTTACACAAAGAGGCTACTCAGATGGGATACTAT 1377
Query 121 GTTAAGGATTCATCTGGAAAAGACTTTGATGGTTGGTGCTGGCCTGGTTCATCATCATAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1378 GTTAAGGATTCATCTGGAAAAGACTTTGATGGTTGGTGCTGGCCTGGTTCATCATCTTAC 1437
Query 181 ATTGATATGTTGAGCCCACAGATTAGAAAATGGTGGGGTGGTAGGTTCTCATATAAGAAC 240
|||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1438 ATTGATATGTTGAGCCCAGAGATTAGAAAATGGTGGGGTGGGAGGTTCTCGTATAAGAAC 1497
Query 241 TATGTTGGGTCAACTCCAT--T-GTATACCTGGAATGACATGAATGAGCCTTCCGTATTC 297
|||||||| |||||||||| | ||| |||||||||||||||||||||||||| ||||||
Sbjct 1498 TATGTTGGTTCAACTCCATCATTGTACACCTGGAATGACATGAATGAGCCTTCTGTATTC 1557
Query 298 AATGGTCCCGAGGTT 312
|||||||||||||||
Sbjct 1558 AATGGTCCCGAGGTT 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5