BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894293
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2013 0.0
AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 808 0.0
> AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:8129979-8133301 REVERSE LENGTH=1811
Length=1811
Score = 2013 bits (1090), Expect = 0.0
Identities = 1268/1350 (94%), Gaps = 27/1350 (2%)
Strand=Plus/Plus
Query 50 GGTGTGGATTTCTCAAGTG-TAGCAGTGACTATCTTACAAGAAAACACCTGCGGAGGAAT 108
||||||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||
Sbjct 172 GGTGTGGATTTCTTAAGTGTTA-TAGTGACTATATTACAAGAAAATACCTGCGGAGGAAT 230
Query 109 AGGACTCAAGCCATAGCAGAGTATTTAGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 168
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 231 AGGACTCAAGCTATAGCAGAGTATTTGGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 290
Query 169 AAGTCAAGTTATCATCCTTCCGAAGAAATCAGAGCTTATGTGCCAGAGAAGAATCCTGGA 228
|||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||
Sbjct 291 AAGTCAAGTTATCATCCTTCAGAAGATATCAGAGCATATGTGCCAGAGAAGAATCCTGGA 350
Query 229 GATTCTAGGCTTTCACCTCCAGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 288
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 351 GATTCTAGGCTTTCACCTCCTGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 410
Query 289 ACCCTGATGCTTTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCCGAT 348
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 411 ACCCTGATGCTCTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCGGAT 470
Query 349 ATACCTTATGTAACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAT 408
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATACCTTATGTCACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAC 530
Query 409 ATAATGCAGACTGTTGTTGCTTCTGATAATAATTATGTGCAAGTGATAGTAGGTTTTGAT 468
|||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||
Sbjct 531 ATAATGCAGACTGTTGTTACATCTGATAATAATTATGTGCAAGTAATAGTAGGTTTTGAT 590
Query 469 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTCGGGATT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 591 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTTGGGATT 650
Query 529 GAAGAAATCGAAGATGGTGAAAGTGAAGTCGAGGATGAAAACAAGGGGGATGAGGATGAA 588
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 651 GAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATGAAAACAAGGGCGATGAGGATGAA 710
Query 589 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 770
Query 649 AGTTATGTATCAGAGTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGG 708
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 AACTATGTCTCAGACTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGA 830
Query 709 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 890
Query 769 AATTGGATGGAGCAGCCGTCCGCTGGCCTTGCTATCCAGGGGCTCTTGAGTCGTGTTGTT 828
||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 891 AATTGGATGGATCAGCCGTCCGCTGGCCTTGCTATCCAAGGGCTCTTGAGTCCTGTCATT 950
Query 829 GTGGAAGATCACTCGGATATCCAAAAACATATCTCTGGTTGCAAATCTACAGGCACTGAC 888
|||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 951 GTGGAAGATCACTCAGATATCCAAAAACATATCTCTGGTTGTATATCTACAGGCACTGAC 1010
Query 889 AGAAACAAGGAGGGAGGAAACTCAGAAGAGAAATTTGAAGGCATTGGTGAGAATGAATCT 948
| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1011 AAAAACAAGGAGAGAGAAAACTCAGAAGAGATATTTGAAGGCATTGGTGAGAATGAATCT 1070
Query 949 GAGATATTGCA-GCTTGAAAATTCGAGAAATGCCATATC-GTACTACAAGCTGGAGATAA 1006
||||||||||| | ||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 1071 GAGATATTGCATG-TTGAAAATTCGAGAAATGCTATA-CAGTACTACAAGCTGGAGATAA 1128
Query 1007 TAAGAATCCAGCTCATCACGGCACAGGGACATCAGGCAAGATTCTCACGCCTTACTGAAG 1066
|||||||||||||||||||||||||||| | || | | | | |||||||
Sbjct 1129 TAAGAATCCAGCTCATCACGGCACAGGG------G-CA---T-C--A-G----ACTGAAG 1170
Query 1067 TGAAAGTGGAAGACGTCAGGAAAGTACAACCTGATGCTATTGCTCGTGCATCAGATGGTA 1126
|| ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||
Sbjct 1171 TGGAAGTGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTA 1230
Query 1127 T-CGTGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAAATCTCTGTGC 1185
| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1231 TAC-TGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGT 1289
Query 1186 TGGAGACATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATAGGGATAGATTCACTTGGT 1245
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1290 TGGAGAAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGT 1349
Query 1246 TTCGACCTCAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1305
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TTCGACCTTAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1409
Query 1306 AGGGCAACATCAGTTCACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGTTTCGACA 1365
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1410 AGGGCAACATCAGAACACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGCTTCTACA 1469
Query 1366 CCACCCAAACCACTAGAAACCAAAACAAAC 1395
|| |||| || | ||||||||||||||||
Sbjct 1470 CCTTCCAAGCCGC-AGAAACCAAAACAAAC 1498
> AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:18211863-18215619 REVERSE LENGTH=1886
Length=1886
Score = 808 bits (437), Expect = 0.0
Identities = 1064/1352 (79%), Gaps = 102/1352 (8%)
Strand=Plus/Plus
Query 53 GTGGATTTCTCAAGTGTAGCAGTGACTATCTTACAAGAAAACACCTGCGGAGGAATAGGA 112
|||| ||||| |||| | |||||||||| | |||||||||||||| |||| |||| | |
Sbjct 226 GTGGGTTTCTGAAGTACAACAGTGACTATATAACAAGAAAACACCTACGGAAGAATCGAA 285
Query 113 CTCAAGCCATAGCAGAGTATTTAGGTTCAGCTTCAGATCCTA-AGAAGCCAACTGGGAAG 171
||||||||| ||| |||||| ||| ||||||||||||||| | | |||| |||||| |||
Sbjct 286 CTCAAGCCACAGCTGAGTATGTAGATTCAGCTTCAGATCC-AGAAAAGCAAACTGGCAAG 344
Query 172 TCAAGTTATCATCCTTCCGAAGAAATCAGAGCTTATGTGCCAGAGAAGAATCCTGGAGAT 231
||||| ||||||||||| |||||||||||||| | | |||| | ||||| |||||||
Sbjct 345 TCAAGGTATCATCCTTCAGAAGAAATCAGAGCCTCTTTGCC--A-CAGAATGATGGAGAT 401
Query 232 TCTAGGCTTTCACCTCCAGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGAACC 291
|| |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 402 TCCAGGCTTTCACCTGCAGAAACTACTAGAACCATCATTGAGGTGAACAATAAAGGAACC 461
Query 292 CTGATGCTTTCAGGTT-TACTTGGT-ATTGGAGTTCATGAGAATATTCTCTGGCCCGATA 349
||||||||| |||||| || ||||| | ||||||||||||||||||||||||||| ||||
Sbjct 462 CTGATGCTTACAGGTTCTA-TTGGTGA-TGGAGTTCATGAGAATATTCTCTGGCCAGATA 519
Query 350 TACCTTATGTAACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGATA 409
|||||||| |||||||||| |||||||| |||| |||||||||||||| |||||||
Sbjct 520 TACCTTATATAACAGATCAAAATGGAAATTTATACTTTCAAGTAAAGGAGGATGAGGACG 579
Query 410 TAATGCAGACTGTTGTTGCTTCTGATAATAATTATGTGCAAGTGATAGTAGGTTTTGATA 469
| |||||| | ||| ||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 580 TCATGCAGTCCGTTA---CTTCTGAAAATAATTATGTGCAAGTTATAGTTGGTTTTGATA 636
Query 470 CGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTCCATCTGGTATTGG-TTTCGGGAT 527
||||||||||||||||||| |||||||||| | | | |||| || || ||| | |
Sbjct 637 CGATGGAGATGATCAAGGAAATGGAGCTGATGG-GACTTTCTGATAGTGACTTT-GAAAC 694
Query 528 TGAAGAA-ATCGAA-GATGGTGAA-AGTGA-AGTCGAGGATGAAA--ACAAGGGG--GAT 579
|||||| || ||| | ||| || | ||| ||| |||||| | | | ||| | |||
Sbjct 695 TGAAGATGAT-GAAAG-TGGAGATGA-TGACAGT-GAGGAT-ACAGGAGAAGACGAAGAT 749
Query 580 GAGGATGAA-GGAGAAGAC-A----A-AG-ATGACGAGGAATGG-GTTGCTGTTCTAGAA 630
||||| ||| || | | | | | || |||| || ||| | | || || | ||
Sbjct 750 GAGGAGGAATGG-GTTG-CTATTTTAGAGGATGAAGATGAA-GACGATGATGAT---GAT 803
Query 631 GATGGA-GATGACGAGGATAGTT-ATGTAT-CAGAGTCTGATGAATCACTTGGAGACTGG 687
|||| | ||||| |||||| | | ||| || | || ||||||||||| || |||||||||
Sbjct 804 GATG-ATGATGATGAGGAT-GATGATG-ATTCTGATTCTGATGAATCGCTGGGAGACTGG 860
Query 688 GCAAACTTGGAAACGATGCGGTA-TTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGA 746
||||| |||||||| ||| || | ||| ||||| |||| |||||| | ||| ||| | ||
Sbjct 861 GCAAATTTGGAAACAATGAGG-AGTTGTCATCCCATGTTTTTTGCAAAGAGAATGACTGA 919
Query 747 GGTTGCTTCAACTGATCCTGTAAATTGGATGGAGCAGCCGTCCGCTGGCCTTGCTATCCA 806
||||||||||| ||||||||| |||||||||| |||||||| |||||||||||||||||
Sbjct 920 GGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATCCA 979
Query 807 GGGGCTCTTGAGTCGTGTTGTT-GTGGAAGATCACTCGGATATCCAAAA-ACA-TATCTC 863
||| || ||||||| | | || ||||||||| | || ||||||||||| | | | | |
Sbjct 980 GGGACTTTTGAGTCATATC-TTAGTGGAAGATTATTCAGATATCCAAAAGAAACT-TG-C 1036
Query 864 TGGTTGCAAATCTACAGGCACTGACAGAAACAAGGAGGGAGGAAACTCAGAAGAGAAATT 923
|| | |||| |||||| ||| || |||||||||| | || ||||| || || || |
Sbjct 1037 TGATAGCAATTCTACA---ACTAACGGAAACAAGGATGCAGAAAACTTAGTGGACAAGCT 1093
Query 924 TGAAGGCATTGGTGAGA-A--TG---A--A-TCTGAGATA--TTG--CA--GCTTGAAAA 968
||||| || | || || | || | | ||||||||| || || | ||||||
Sbjct 1094 TGAAGACAATAGTAAGGCAGGTGGTGACGAATCTGAGATAGATTCATCACAGGATGAAAA 1153
Query 969 TTCGAGAAATGCCATATCGTACTACAAGCTGGAGATAATAAGAATCCAGCTCATCACGGC 1028
| ||||||| | ||| |||||||||||||| |||||||| ||||| ||||| ||
Sbjct 1154 AGCAAGAAATGTGGTGGCGTTTTACAAGCTGGAGATGATAAGAATTCAGCTTATCACAGC 1213
Query 1029 ACAGGGACATCAGGCAAGATTCTCACGCCTTACTGAAGT-GAAAGTGGAAGACGTCAGGA 1087
||| || || | | | | | |||||||| || |||||||| ||||| |
Sbjct 1214 ACAAGG------GG-A---T-C--A-G----ACTGAAGTTGAG-GTGGAAGATGTCAGAA 1254
Query 1088 AAGTACAACCTGATGCTATTGCTCGTGCATCAGATGGTATCGTGA-CTCGTCTAGAAGAA 1146
||| |||||||||||||||||||| |||||||| || ||| | | | ||| ||||||||
Sbjct 1255 AAGCACAACCTGATGCTATTGCTCATGCATCAGCTGAAATCATAAGC-CGTTTAGAAGAA 1313
Query 1147 GATGGCGATAAACTAACTGAAGCTCTCAAATCTCTGTGCTGGAGACATAATGGGATTCAA 1206
||| |||||| |||||||||| |||||||||||||| ||||||||||| | ||||||
Sbjct 1314 TCTGGTGATAAAATAACTGAAGCACTCAAATCTCTGTGTTGGAGACATAACAGTATTCAA 1373
Query 1207 GCAGAGGAAGTGAAGCTCATAGGGATAGATTCACTTGGTTTCGACCTCAGGATTTGCTCA 1266
||||||||||||||||| || ||||||||||| || ||||| ||||||||| ||||| ||
Sbjct 1374 GCAGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCA 1433
Query 1267 GGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGGGCAACATCAGTTCACA 1324
||| ||||| ||||| |||| || ||||||||||||| |||||||||||||| | |
Sbjct 1434 GGA--GCAAAGATTGAGTCATTGCGATTTGCATTCTCGACAAGGGCAACATCAGAAGAAA 1491
Query 1325 ACGCTGAGGGACAGTTGAGAGAATTATTATTC 1356
|||| |||||||| | ||| || ||||||||
Sbjct 1492 ACGCAGAGGGACAAATAAGAAAACTATTATTC 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5