BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894293 Length=1398 Score E Sequences producing significant alignments: (Bits) Value AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2013 0.0 AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 808 0.0 > AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:8129979-8133301 REVERSE LENGTH=1811 Length=1811 Score = 2013 bits (1090), Expect = 0.0 Identities = 1268/1350 (94%), Gaps = 27/1350 (2%) Strand=Plus/Plus Query 50 GGTGTGGATTTCTCAAGTG-TAGCAGTGACTATCTTACAAGAAAACACCTGCGGAGGAAT 108 ||||||||||||| ||||| || ||||||||| ||||||||||| |||||||||||||| Sbjct 172 GGTGTGGATTTCTTAAGTGTTA-TAGTGACTATATTACAAGAAAATACCTGCGGAGGAAT 230 Query 109 AGGACTCAAGCCATAGCAGAGTATTTAGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 168 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 231 AGGACTCAAGCTATAGCAGAGTATTTGGGTTCAGCTTCAGATCCTAAGAAGCCAACTGGG 290 Query 169 AAGTCAAGTTATCATCCTTCCGAAGAAATCAGAGCTTATGTGCCAGAGAAGAATCCTGGA 228 |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| Sbjct 291 AAGTCAAGTTATCATCCTTCAGAAGATATCAGAGCATATGTGCCAGAGAAGAATCCTGGA 350 Query 229 GATTCTAGGCTTTCACCTCCAGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 288 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 351 GATTCTAGGCTTTCACCTCCTGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGA 410 Query 289 ACCCTGATGCTTTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCCGAT 348 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 411 ACCCTGATGCTCTCAGGTTTACTTGGTATTGGAGTTCATGAGAATATTCTCTGGCCGGAT 470 Query 349 ATACCTTATGTAACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAT 408 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 ATACCTTATGTCACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGAC 530 Query 409 ATAATGCAGACTGTTGTTGCTTCTGATAATAATTATGTGCAAGTGATAGTAGGTTTTGAT 468 |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||| Sbjct 531 ATAATGCAGACTGTTGTTACATCTGATAATAATTATGTGCAAGTAATAGTAGGTTTTGAT 590 Query 469 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTCGGGATT 528 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 591 ACGATGGAGATGATCAAGGACATGGAGCTGAGCAGTCCATCTGGTATTGGTTTTGGGATT 650 Query 529 GAAGAAATCGAAGATGGTGAAAGTGAAGTCGAGGATGAAAACAAGGGGGATGAGGATGAA 588 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 651 GAAGAAATCGAAGATGGTGAAAGTGAAGTTGAGGATGAAAACAAGGGCGATGAGGATGAA 710 Query 589 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 GGAGAAGACAAAGATGACGAGGAATGGGTTGCTGTTCTAGAAGATGGAGATGACGAGGAT 770 Query 649 AGTTATGTATCAGAGTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGG 708 | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 771 AACTATGTCTCAGACTCTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGA 830 Query 709 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 831 TATTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTA 890 Query 769 AATTGGATGGAGCAGCCGTCCGCTGGCCTTGCTATCCAGGGGCTCTTGAGTCGTGTTGTT 828 ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| || Sbjct 891 AATTGGATGGATCAGCCGTCCGCTGGCCTTGCTATCCAAGGGCTCTTGAGTCCTGTCATT 950 Query 829 GTGGAAGATCACTCGGATATCCAAAAACATATCTCTGGTTGCAAATCTACAGGCACTGAC 888 |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| Sbjct 951 GTGGAAGATCACTCAGATATCCAAAAACATATCTCTGGTTGTATATCTACAGGCACTGAC 1010 Query 889 AGAAACAAGGAGGGAGGAAACTCAGAAGAGAAATTTGAAGGCATTGGTGAGAATGAATCT 948 | |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 1011 AAAAACAAGGAGAGAGAAAACTCAGAAGAGATATTTGAAGGCATTGGTGAGAATGAATCT 1070 Query 949 GAGATATTGCA-GCTTGAAAATTCGAGAAATGCCATATC-GTACTACAAGCTGGAGATAA 1006 ||||||||||| | ||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct 1071 GAGATATTGCATG-TTGAAAATTCGAGAAATGCTATA-CAGTACTACAAGCTGGAGATAA 1128 Query 1007 TAAGAATCCAGCTCATCACGGCACAGGGACATCAGGCAAGATTCTCACGCCTTACTGAAG 1066 |||||||||||||||||||||||||||| | || | | | | ||||||| Sbjct 1129 TAAGAATCCAGCTCATCACGGCACAGGG------G-CA---T-C--A-G----ACTGAAG 1170 Query 1067 TGAAAGTGGAAGACGTCAGGAAAGTACAACCTGATGCTATTGCTCGTGCATCAGATGGTA 1126 || ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| Sbjct 1171 TGGAAGTGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTA 1230 Query 1127 T-CGTGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAAATCTCTGTGC 1185 | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1231 TAC-TGACTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGT 1289 Query 1186 TGGAGACATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATAGGGATAGATTCACTTGGT 1245 |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1290 TGGAGAAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGT 1349 Query 1246 TTCGACCTCAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1305 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1350 TTCGACCTTAGGATTTGCTCAGGAATGCAAATTGAGACATTACGGTTTGCATTCTCGATA 1409 Query 1306 AGGGCAACATCAGTTCACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGTTTCGACA 1365 ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 1410 AGGGCAACATCAGAACACAACGCTGAGGGACAGTTGAGAGAATTATTATTCGCTTCTACA 1469 Query 1366 CCACCCAAACCACTAGAAACCAAAACAAAC 1395 || |||| || | |||||||||||||||| Sbjct 1470 CCTTCCAAGCCGC-AGAAACCAAAACAAAC 1498 > AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:18211863-18215619 REVERSE LENGTH=1886 Length=1886 Score = 808 bits (437), Expect = 0.0 Identities = 1064/1352 (79%), Gaps = 102/1352 (8%) Strand=Plus/Plus Query 53 GTGGATTTCTCAAGTGTAGCAGTGACTATCTTACAAGAAAACACCTGCGGAGGAATAGGA 112 |||| ||||| |||| | |||||||||| | |||||||||||||| |||| |||| | | Sbjct 226 GTGGGTTTCTGAAGTACAACAGTGACTATATAACAAGAAAACACCTACGGAAGAATCGAA 285 Query 113 CTCAAGCCATAGCAGAGTATTTAGGTTCAGCTTCAGATCCTA-AGAAGCCAACTGGGAAG 171 ||||||||| ||| |||||| ||| ||||||||||||||| | | |||| |||||| ||| Sbjct 286 CTCAAGCCACAGCTGAGTATGTAGATTCAGCTTCAGATCC-AGAAAAGCAAACTGGCAAG 344 Query 172 TCAAGTTATCATCCTTCCGAAGAAATCAGAGCTTATGTGCCAGAGAAGAATCCTGGAGAT 231 ||||| ||||||||||| |||||||||||||| | | |||| | ||||| ||||||| Sbjct 345 TCAAGGTATCATCCTTCAGAAGAAATCAGAGCCTCTTTGCC--A-CAGAATGATGGAGAT 401 Query 232 TCTAGGCTTTCACCTCCAGAAACTGCTAGAACCATCATTGAGGTGAACAAAAAAGGAACC 291 || |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 402 TCCAGGCTTTCACCTGCAGAAACTACTAGAACCATCATTGAGGTGAACAATAAAGGAACC 461 Query 292 CTGATGCTTTCAGGTT-TACTTGGT-ATTGGAGTTCATGAGAATATTCTCTGGCCCGATA 349 ||||||||| |||||| || ||||| | ||||||||||||||||||||||||||| |||| Sbjct 462 CTGATGCTTACAGGTTCTA-TTGGTGA-TGGAGTTCATGAGAATATTCTCTGGCCAGATA 519 Query 350 TACCTTATGTAACAGATCAGCATGGAAATATATATTTTCAAGTAAAGGAAAATGAGGATA 409 |||||||| |||||||||| |||||||| |||| |||||||||||||| ||||||| Sbjct 520 TACCTTATATAACAGATCAAAATGGAAATTTATACTTTCAAGTAAAGGAGGATGAGGACG 579 Query 410 TAATGCAGACTGTTGTTGCTTCTGATAATAATTATGTGCAAGTGATAGTAGGTTTTGATA 469 | |||||| | ||| ||||||| ||||||||||||||||| ||||| |||||||||| Sbjct 580 TCATGCAGTCCGTTA---CTTCTGAAAATAATTATGTGCAAGTTATAGTTGGTTTTGATA 636 Query 470 CGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTCCATCTGGTATTGG-TTTCGGGAT 527 ||||||||||||||||||| |||||||||| | | | |||| || || ||| | | Sbjct 637 CGATGGAGATGATCAAGGAAATGGAGCTGATGG-GACTTTCTGATAGTGACTTT-GAAAC 694 Query 528 TGAAGAA-ATCGAA-GATGGTGAA-AGTGA-AGTCGAGGATGAAA--ACAAGGGG--GAT 579 |||||| || ||| | ||| || | ||| ||| |||||| | | | ||| | ||| Sbjct 695 TGAAGATGAT-GAAAG-TGGAGATGA-TGACAGT-GAGGAT-ACAGGAGAAGACGAAGAT 749 Query 580 GAGGATGAA-GGAGAAGAC-A----A-AG-ATGACGAGGAATGG-GTTGCTGTTCTAGAA 630 ||||| ||| || | | | | | || |||| || ||| | | || || | || Sbjct 750 GAGGAGGAATGG-GTTG-CTATTTTAGAGGATGAAGATGAA-GACGATGATGAT---GAT 803 Query 631 GATGGA-GATGACGAGGATAGTT-ATGTAT-CAGAGTCTGATGAATCACTTGGAGACTGG 687 |||| | ||||| |||||| | | ||| || | || ||||||||||| || ||||||||| Sbjct 804 GATG-ATGATGATGAGGAT-GATGATG-ATTCTGATTCTGATGAATCGCTGGGAGACTGG 860 Query 688 GCAAACTTGGAAACGATGCGGTA-TTGCCATCCTATGTATTTTGCCAGGAGGATGGCCGA 746 ||||| |||||||| ||| || | ||| ||||| |||| |||||| | ||| ||| | || Sbjct 861 GCAAATTTGGAAACAATGAGG-AGTTGTCATCCCATGTTTTTTGCAAAGAGAATGACTGA 919 Query 747 GGTTGCTTCAACTGATCCTGTAAATTGGATGGAGCAGCCGTCCGCTGGCCTTGCTATCCA 806 ||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||| Sbjct 920 GGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGGCCTTGCTATCCA 979 Query 807 GGGGCTCTTGAGTCGTGTTGTT-GTGGAAGATCACTCGGATATCCAAAA-ACA-TATCTC 863 ||| || ||||||| | | || ||||||||| | || ||||||||||| | | | | | Sbjct 980 GGGACTTTTGAGTCATATC-TTAGTGGAAGATTATTCAGATATCCAAAAGAAACT-TG-C 1036 Query 864 TGGTTGCAAATCTACAGGCACTGACAGAAACAAGGAGGGAGGAAACTCAGAAGAGAAATT 923 || | |||| |||||| ||| || |||||||||| | || ||||| || || || | Sbjct 1037 TGATAGCAATTCTACA---ACTAACGGAAACAAGGATGCAGAAAACTTAGTGGACAAGCT 1093 Query 924 TGAAGGCATTGGTGAGA-A--TG---A--A-TCTGAGATA--TTG--CA--GCTTGAAAA 968 ||||| || | || || | || | | ||||||||| || || | |||||| Sbjct 1094 TGAAGACAATAGTAAGGCAGGTGGTGACGAATCTGAGATAGATTCATCACAGGATGAAAA 1153 Query 969 TTCGAGAAATGCCATATCGTACTACAAGCTGGAGATAATAAGAATCCAGCTCATCACGGC 1028 | ||||||| | ||| |||||||||||||| |||||||| ||||| ||||| || Sbjct 1154 AGCAAGAAATGTGGTGGCGTTTTACAAGCTGGAGATGATAAGAATTCAGCTTATCACAGC 1213 Query 1029 ACAGGGACATCAGGCAAGATTCTCACGCCTTACTGAAGT-GAAAGTGGAAGACGTCAGGA 1087 ||| || || | | | | | |||||||| || |||||||| ||||| | Sbjct 1214 ACAAGG------GG-A---T-C--A-G----ACTGAAGTTGAG-GTGGAAGATGTCAGAA 1254 Query 1088 AAGTACAACCTGATGCTATTGCTCGTGCATCAGATGGTATCGTGA-CTCGTCTAGAAGAA 1146 ||| |||||||||||||||||||| |||||||| || ||| | | | ||| |||||||| Sbjct 1255 AAGCACAACCTGATGCTATTGCTCATGCATCAGCTGAAATCATAAGC-CGTTTAGAAGAA 1313 Query 1147 GATGGCGATAAACTAACTGAAGCTCTCAAATCTCTGTGCTGGAGACATAATGGGATTCAA 1206 ||| |||||| |||||||||| |||||||||||||| ||||||||||| | |||||| Sbjct 1314 TCTGGTGATAAAATAACTGAAGCACTCAAATCTCTGTGTTGGAGACATAACAGTATTCAA 1373 Query 1207 GCAGAGGAAGTGAAGCTCATAGGGATAGATTCACTTGGTTTCGACCTCAGGATTTGCTCA 1266 ||||||||||||||||| || ||||||||||| || ||||| ||||||||| ||||| || Sbjct 1374 GCAGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCA 1433 Query 1267 GGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGGGCAACATCAGTTCACA 1324 ||| ||||| ||||| |||| || ||||||||||||| |||||||||||||| | | Sbjct 1434 GGA--GCAAAGATTGAGTCATTGCGATTTGCATTCTCGACAAGGGCAACATCAGAAGAAA 1491 Query 1325 ACGCTGAGGGACAGTTGAGAGAATTATTATTC 1356 |||| |||||||| | ||| || |||||||| Sbjct 1492 ACGCAGAGGGACAAATAAGAAAACTATTATTC 1523 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68875147740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5