BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894306
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:81... 2289 0.0
AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding oxidored... 2025 0.0
AT5G24155.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 396 4e-109
> AT5G24160.1 | Symbols: SQE6 | squalene monoxygenase 6 | chr5:8183075-8186640
REVERSE LENGTH=1809
Length=1809
Score = 2289 bits (1239), Expect = 0.0
Identities = 1455/1560 (93%), Gaps = 11/1560 (1%)
Strand=Plus/Plus
Query 5 ATATCGCTTTTACGCACGTTT-TTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGACG 63
|||| |||||||||||||||| || |||||||| || |||||||||||||||| ||||||
Sbjct 38 ATATGGCTTTTACGCACGTTTGTT-TATGGACGTTAGTCGCCTTCGTGCTGACGTGGACG 96
Query 64 GTGTTCTACGTTACAAACAGGGGGAAGAAGGCAACGAAGTTGGCGGATGCGGTGG-TGGA 122
||||||||| |||| |||| | ||||||||| ||| | ||||| ||| |||||| | ||
Sbjct 97 GTGTTCTACCTTACCAACATGAAGAAGAAGGCGACGGATTTGGCTGATACGGTGGCT-GA 155
Query 123 AGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGC 182
|| | ||||||||||||||||||||| || ||||| |||||||| || || || |||||
Sbjct 156 GGATCAAAAAGACGGTGCTGCTGACGTCATTATCGTCGGGGCTGGTGTAGGTGGTTCGGC 215
Query 183 TCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACATGAG 242
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 216 TCTCGCATATGCTCTTGCTAAGGATGGGCGTCGAGTACATGTGATCGAGAGGGACATGAG 275
Query 243 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTCTAA 302
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 276 AGAACCAGAAAGAATGATGGGTGAGTTTATGCAACCTGGCGGACGACTCATGCTTTCTAA 335
Query 303 GCTTGGCCTTCAAGATTGTTTGGAAGACATAGATGCACAGAAAGCCACGGGCTTCGCAGT 362
||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 336 ACTTGGCCTTCAAGATTGCTTGGAAGACATAGATGCACAGAAAGCCACGGGTTTGGCAGT 395
Query 363 TTATAAGGATGGAAAAGAAGCAGTCGCACCTTTTCCAGTGGAAAACAACAACTTTTCTTA 422
|||||| |||||||||||||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 396 TTATAAAGATGGAAAAGAAGCAGACGCACCTTTTCCAGTGGATAACAACAATTTTTCTTA 455
Query 423 TGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTTGTCCAGCAATTGCGTCGAAAGGC 482
|||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 456 TGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTCGTCCAACAACTGCGTCGAAAGGC 515
Query 483 TTCTTCTCTTCCCAATGTGCGCCTCGAAGAAGGAACGGTGAAGTCTTTAATAGAAGAAAA 542
|| ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 516 TTTTTCTCTTTCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTACTAGAAGAAAA 575
Query 543 AGGAGTGATCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAAGAGCCTTGGC 602
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 576 AGGAGTGGTCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAACAGCCTTGGC 635
Query 603 ACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGTAGGTCTCTT-A--ATGA 659
|||||||||||| |||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 636 ACCTCTCACTGTGGTATGCGACGGTTGCTACTCAAACCTTCGTCGGTCTCTTAATGATGA 695
Query 660 CAACAATGCGGAGATTCTGTCGTACCTAGTTGGTTTCATCTCCAAGAATTGTCGACTTGA 719
||||||||| |||||| |||||||| ||||||||| |||||| ||||||||||| |||||
Sbjct 696 CAACAATGCTGAGATTATGTCGTACATAGTTGGTTACATCTCAAAGAATTGTCGGCTTGA 755
Query 720 AGAACCCGAAAA-CTTACATTTGATATTGTCTAAACCTTCTTTCACCATGGTATATCAAA 778
|||||||||||| | |||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 756 AGAACCCGAAAAGC-TACACTTGATATTGTCTAAACCATCTTTCACCATGGTATACCAAA 814
Query 779 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAAAATTTTCCTTCTATTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAAAATTTTCCTTCTATTG 874
Query 839 CAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAAC 934
Query 899 TCCGCAAAATATTTTTGAAAGGAATAAATGAGGGAGCACAGATAAAAGTCGTGCCAGCAA 958
|||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||
Sbjct 935 TCCGCAAAATATTTTTGAAAGGTATAGATGAGGGAGCACACATAAAAGTGGTGCCGGCAA 994
Query 959 AGCGCATGTCAGCTAGTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATTCA 1018
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 AGCGCATGACATCTACTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATTCA 1054
Query 1019 ACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTACTGTCTGACATTCTCATTC 1078
| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||
Sbjct 1055 ATATGCGTCATCCAGTTGTTGCATCTGGAATGATGGTTTTACTGTCGGACATTCTCATTC 1114
Query 1079 TACGCCGTCTTCTCCAGCCATTAAGCAACCTCGGCGATGCTAACAAAGTCTCAGAAGTTA 1138
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1115 TACGCCGTCTTCTTCAGCCATTAAGCAACCTCGGCGATGCAAACAAAGTCTCAGAAGTTA 1174
Query 1139 TCAATTCTTTTTAT-AGTATTCGCAAGCCAATGTCAGCGACGGTTAACACATTAGGAAAT 1197
||||||| |||||| | ||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1175 TCAATTCCTTTTATGA-TATCCGCAAGCCAATGTCGGCGACGGTTAACACATTGGGAAAT 1233
Query 1198 GCATTTTCTCAAGTGCTAATTGGATCAACGGACGAAGCAAAAGAGGCAATGAGACAGGGT 1257
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1234 GCATTTTCTCAAGTACTAATTGGATCAACGGATGAAGCAAAAGAGGCAATGAGACAGGGT 1293
Query 1258 GTCTATGATTACCTTTGTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTCTGCTCGGC 1317
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1294 GTCTATGATTACCTTTGTAGTGGCGGGTTTCGTACGTCAGGGATGATGGCTCTGCTCGGC 1353
Query 1318 GGCATGAATCCTCGTCCGCTCTCTCTTATCTATCATCTCTGTGCTATCACTATATCCTCT 1377
||||||||||||||||| |||||||| |||||||||| ||||| |||||| |||||||
Sbjct 1354 GGCATGAATCCTCGTCCTCTCTCTCTCGTCTATCATCTTTGTGCCATCACTCTATCCTCC 1413
Query 1378 ATTGGCCATCTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTCAAGCTT 1437
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 ATTGGCCAACTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTCAAGCTT 1473
Query 1438 TTTGGTTTGGCCTTGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGCCAAATG 1497
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TTTGGTTTGGCCATGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGCCAAATG 1533
Query 1498 TTGTTTCCAGCAAATGCAGCCGCGTATCGCAAAAGCTATATGGCCGCAACCGCTCTCTAA 1557
|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 1534 TTGTTTCCAGCAAATGCAGCCGCGTATCACAAAAGCTATATGGCTGCAACCACTCTCTAA 1593
> AT5G24150.1 | Symbols: SQP1, SQE5 | FAD/NAD(P)-binding oxidoreductase
family protein | chr5:8172332-8175431 REVERSE LENGTH=1849
Length=1849
Score = 2025 bits (1096), Expect = 0.0
Identities = 1414/1567 (90%), Gaps = 24/1567 (2%)
Strand=Plus/Plus
Query 3 GGATATCGCTTTTACGCACGTTTTTGTATGGACGCTACTCGCCTTCGTGCTGACTTGGAC 62
|||||| || |||||| |||||| |||||||||||||||||||| |||||||||||||
Sbjct 33 GGATATGGCCTTTACGAACGTTTGCCTATGGACGCTACTCGCCTTCATGCTGACTTGGAC 92
Query 63 GGTGTTCTACGTTACAAACAGGGGGAAGAAGGCAACGAAGTTGGCGGATGCGGTGGTGGA 122
||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 93 AGTGTTCTACGTCACAAACAGGGGGAAGAAGGCGACGCAGTTGGCGGATGCGGTGGTTGA 152
Query 123 AGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTCGGC 182
||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 153 AGAGCGAGAAGACGGTGCTACTGACGTTATCATCGTTGGGGCTGGAGTAGGCGGCTCGGC 212
Query 183 TCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACATGAG 242
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| ||||
Sbjct 213 TCTCGCATATGCTCTTGCTAAGGACGGGCGTCGAGTCCATGTAATAGAGAGGGACCTGAG 272
Query 243 AGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTCTAA 302
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 273 AGAACCAGAGAGAATCATGGGTGAGTTTATGCAACCAGGAGGACGACTCATGCTCTCTAA 332
Query 303 GCTTGGCCTTCAAGATTGTTTGGA-AGACATAGATGCACAGAAAGCCACGGGCTTCG-CA 360
|||||| ||| ||||||||||||| || |||||||| || |||||||||||| | | ||
Sbjct 333 GCTTGGTCTTGAAGATTGTTTGGAGGGA-ATAGATGCCCAAAAAGCCACGGGCAT-GACA 390
Query 361 GTTTATAAGGATGGAAAAGAAGCAGTCGCACCTTTTCCAGTGGAAAACAACAACTTTT-C 419
||||||||||| |||||||||||||||||| ||||||| ||||| |||||||| |||| |
Sbjct 391 GTTTATAAGGACGGAAAAGAAGCAGTCGCATCTTTTCCCGTGGACAACAACAA-TTTTCC 449
Query 420 TTATGAACCTTCTGCTCGATCTTTTCACAATGGCCGATTTGTCCAGCAATTGCGTCGAAA 479
|| ||| ||||| |||||||||||||||||||||||||| ||||| | |||||| | |||
Sbjct 450 TTTTGATCCTTCGGCTCGATCTTTTCACAATGGCCGATTCGTCCAACGATTGCGGCAAAA 509
Query 480 GGCTTCTTCTCTTCCCAATGTGCGCCTCGAAGAAGGAACGGTGAAGTCTTTAATAGAAGA 539
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 510 GGCTTCTTCTCTTCCCAATGTGCGCCTGGAAGAAGGAACGGTGAAGTCTTTGATAGAAGA 569
Query 540 AAAAGGAGTGATCAAAGGAGTGACATACAAGAATAAAGAAGGCGAAGAAACAAGAGCCTT 599
|||||||||||||||||||||||||||||| |||| | |||||||||||||| ||||||
Sbjct 570 AAAAGGAGTGATCAAAGGAGTGACATACAAAAATAGCGCAGGCGAAGAAACAACAGCCTT 629
Query 600 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGTAGGTCTCTTAATGA 659
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 630 GGCACCTCTCACTGTAGTATGCGACGGTTGCTACTCAAACCTTCGCCGGTCTCTTAATGA 689
Query 660 CAACAATGCGGAGATTCTGTCGTACCTAGTTGGTTTCATCTCCAAGAATTGTCGA-CTTG 718
||||||||||||| ||||||| |||| ||||||||| ||||| ||||| |||| | ||||
Sbjct 690 CAACAATGCGGAGGTTCTGTCATACCAAGTTGGTTTTATCTCAAAGAACTGTC-AGCTTG 748
Query 719 AAGAACCCGAAAACTTACATTTGATATTGTCTAAACCTTCTTTCACCATGGTATATCAAA 778
||||||||||||| ||| | |||||| |||||||||| || ||||||||| | |||||||
Sbjct 749 AAGAACCCGAAAAGTTAAAGTTGATAATGTCTAAACCCTCCTTCACCATGTTGTATCAAA 808
Query 779 TAAGCAGCACTGACGTTCGTTGTGGTTTTGAGGTTCTCCCCGAA-AATTTTCCTTCTATT 837
| |||||||| ||||||||||||| |||||| ||||||||| || || |||||||||||
Sbjct 809 TCAGCAGCACCGACGTTCGTTGTGTTTTTGAAGTTCTCCCC-AACAACATTCCTTCTATT 867
Query 838 GCAAATGGTGAAATGTCTACTTTCATGAAGAATACTATAGTTCCTCAGGTACCTCCAAAA 897
|||||||||||||| |||||||| ||||||| ||||| | ||||||||||||| ||||
Sbjct 868 TCAAATGGTGAAATGGCTACTTTCGTGAAGAACACTATTGCTCCTCAGGTACCTTTAAAA 927
Query 898 CTCCGCAAAATATTTTTGAAAGGAATAAATGAGGGAGCACAGATAAAAGTCGTGCCAGCA 957
||||||||||||||||||||||| || |||| |||| ||| ||||||| | ||||| ||
Sbjct 928 CTCCGCAAAATATTTTTGAAAGGGATTGATGAAGGAGAACATATAAAAGCCATGCCAACA 987
Query 958 AAG-CGCATGTCAGCTAGTTTAAGCAAGAAGAAAGGTGTGATTGTATTGGGAGATGCATT 1016
||| | ||| |||||| ||| ||| |||||||||| |||||| ||||||||||||||||
Sbjct 988 AAGAAG-ATGACAGCTACTTTGAGCGAGAAGAAAGGAGTGATTTTATTGGGAGATGCATT 1046
Query 1017 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTACTGTCTGACATTCTCAT 1076
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1047 CAACATGCGTCATCCAGCAATCGCATCTGGAATGATGGTTTTATTATCTGACATTCTCAT 1106
Query 1077 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTCGGCGATGCT-AACAAAGTCTCAGAAG 1135
||||||||||||||||||||||||||||||||| ||| |||| || ||| ||||| |||
Sbjct 1107 TCTACGCCGTCTTCTCCAGCCATTAAGCAACCTTGGCAATGCGCAAAAAA-TCTCACAAG 1165
Query 1136 TTATCAATTCTTTTTAT-AGTATTCGCAAGCCAATGTCAGCGACGGTTAACACATTAGGA 1194
||||||| || |||||| | ||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1166 TTATCAAGTCCTTTTATGA-TATCCGCAAGCCAATGTCAGCGACAGTTAACACGTTAGGA 1224
Query 1195 AATGCATTTTCTCAAGTGCTAATTGGATCAACGGACGAAGCAAAAGAGGCAATGAGACAG 1254
|||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1225 AATGCATTCTCTCAAGTGCTAGTTGCATCGACGGACGAAGCAAAAGAGGCAATGAGACAA 1284
Query 1255 GGT-GTCTATGATTACCTTTGTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTCTGCT 1313
||| | |||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct 1285 GGTTG-CTATGATTACCTCTCTAGTGGTGGGTTTCGCACGTCAGGGATGATGGCTTTGCT 1343
Query 1314 CGGCGGCATGAATCCTCGTCCGCTCTCTCTTATCTATCATCTCTGTGCTATCACTATATC 1373
||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||| ||||
Sbjct 1344 AGGCGGCATGAACCCTCGTCCGATCTCTCTCATCTATCATCTATGTGCTATCACTCTATC 1403
Query 1374 CTCTATTGGCCATCTGCTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCT-CA 1432
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1404 CTCCATTGGCCATCTACTCTCTCCATTTCCCTCTCCCCTTCGCATTTGGCATAGCCTTCG 1463
Query 1433 AGCTTTTTGGTTTGGCCT-TGAAAATGTTGGTTCCCAATCTCAAAGCTGAAGGAGTTAGC 1491
| |||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1464 A-CTTTTTGGTTTGGC-TATGAAAATGTTGGTTCCCCATCTCAAGGCTGAAGGAGTTAGC 1521
Query 1492 CAAATGTTGTTTCCAG-CAAATGCAGCCGCGTATCGCAAAAGCTATATGGCCGCAACCGC 1550
|||||||||||||||| ||| || ||||||||| |||||||||||||||| ||||| ||
Sbjct 1522 CAAATGTTGTTTCCAGTCAAC-GCCGCCGCGTATAGCAAAAGCTATATGGCTGCAACGGC 1580
Query 1551 TCTCTAA 1557
|||||||
Sbjct 1581 TCTCTAA 1587
> AT5G24155.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:8180118-8181027 REVERSE LENGTH=377
Length=377
Score = 396 bits (214), Expect = 4e-109
Identities = 283/317 (89%), Gaps = 2/317 (1%)
Strand=Plus/Plus
Query 1 ATGGATATCGCTTTTACGCACGTTTTTGTATGGACGCTACTCGCCTTCGTGCTGACTTGG 60
|||||||| || ||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 12 ATGGATATGGCCTTTACGCACGTTTGTCTATGGACGCTACTCGCCTTCGTGCTGACCTGG 71
Query 61 ACGGTGTTCTACGTTACAAACAGGGGGAAGAAGGCAAC-GAAGTTGGCGGATGCGGTGGT 119
||||||||||||||||| |||||| ||||||||| | ||| ||||| ||||||| |
Sbjct 72 ACGGTGTTCTACGTTACCAACAGGAAGAAGAAGGCGCCGGAA-TTGGCAGATGCGGCAGC 130
Query 120 GGAAGAGCGAAAAGACGGTGCTGCTGACGTTATCATCGTTGGGGCTGGAGTTGGCGGCTC 179
|| ||| ||| |||| |||||||||| ||||||||||| ||||||||||| || |||||
Sbjct 131 AGAGGAGAGAAGAGACAGTGCTGCTGATGTTATCATCGTCGGGGCTGGAGTAGGTGGCTC 190
Query 180 GGCTCTCGCATATGCTCTTGCTAAGGACGGACGTCGAGTACATGTGATAGAGAGGGACAT 239
||||||||||||| |||||||||||||||| || ||||||| || |||||||||||| ||
Sbjct 191 GGCTCTCGCATATTCTCTTGCTAAGGACGGGCGCCGAGTACTTGCGATAGAGAGGGATAT 250
Query 240 GAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAACCAGGTGGACGACTCATGCTTTC 299
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 251 GAGAGAACCAGAGAGAATGATGGGTGAGTTTATGCAGCCAGGAGGACGACTCATGCTTTC 310
Query 300 TAAGCTTGGCCTTCAAG 316
||||||||||||| |||
Sbjct 311 TAAGCTTGGCCTTGAAG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5