BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894309
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5... 1620 0.0
AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5... 1158 0.0
> AT5G24180.1 | Symbols: | Lipase class 3-related protein | chr5:8195600-8197119
FORWARD LENGTH=1128
Length=1128
Score = 1620 bits (877), Expect = 0.0
Identities = 1049/1132 (93%), Gaps = 11/1132 (1%)
Strand=Plus/Plus
Query 1 ATGGGACGAGG--CT-TCAGAAAA-AGATTAGGAGGAAAAGCGATAGCTT-CAGAAGATA 55
||||||||||| || || ||||| || | |||||| ||| || |||| || ||||||
Sbjct 1 ATGGGACGAGGTTCTCTCGGAAAACTGA-TGGGAGGAGAAGAGAGGGCTTCCA-AAGATA 58
Query 56 CAGATACTTTCAGCATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGACCAATCCGT 115
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 59 CAGATACTTTCAACATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGAACAATCAGT 118
Query 116 ACCATCGAACTTCAGTGGCATCAAGTTTGGTAAATGGAGTGTACACATTGGAAGCGGACA 175
|||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 119 ACCATCGAACCTCAGTGGCATCAAGTTTGGTAAATGGAGTGTATACATTGGAAGGGGACA 178
Query 176 GGCTTGAGGAACGGGTAGGTTCTGAAGCTCTAGCCAAGCCCTGGTGGGAATTTTTCCACT 235
||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 179 GGCTTGAGGAACGGGAAGGTTCTGAAGCACTAGCCAAGCCATGGTGGGAATTTTTCCACT 238
Query 236 TCACTTTACTCGAAACCTTGAACGACGATGACAGCTCCATATATGGTGCCATTTTCGAAT 295
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 239 TCACTTTACTCGAAACCTTGATCGACGATGACAGCTCCATCTATGGTGCCATTTTCGAAT 298
Query 296 ACGAGCTATACAACCTTTACGAAAATACCCCTCATGTGAAAGTTCCACGCTATGTGATTG 355
|||| |||||| |||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 299 ACGAACTATACCACCTCTACCAAAATACCCCTCATGTGAAAGTTCCACGCTATGTAATTG 358
Query 356 CCTTCCGCGGCACGGTTTTAAAGGGAAAAACTTGGAAGTTTGATTTGAAACTTGACCTCA 415
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTTCCGCGGCACAGTTTTAAAGGGAAAAACTTGGAAGTTTGATTTGAAACTTGACCTCA 418
Query 416 AATGCATCTTCAACACCCTCCATCAAGGTAATAGGTCTATGTACGCCCTGAACGCAGTCC 475
||||||||||||||||||||||||||||| ||||||||||||||| | || | | |||
Sbjct 419 AATGCATCTTCAACACCCTCCATCAAGGTGGCAGGTCTATGTACGCCATAAATGTAATCC 478
Query 476 GCCGTATGGTGGATAAACACAACCATTCAGCTATCTGGCTTGCTGGACACTCATTGGGAG 535
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 479 GCCGTATGGTGGACAAACACAACCATTCAGCTATCTGGCTTGCTGGACACTCTTTGGGAG 538
Query 536 CCGCCCTAGTGTTGTTGGCTGGAAAGACCATGACTAGGGT-TGGATTCTTCCTCGAAAGT 594
|||||||||||||| |||||||||||||||||| | | ||||||| ||||||| |||
Sbjct 539 CCGCCCTAGTGTTGCTGGCTGGAAAGACCATGAAAATT-TCTGGATTCCTCCTCGAGAGT 597
Query 595 TACATATTTAACCCACCCATCTCTTCTATTCCTCTAGAGCAGCTACCCGGGGGCGATATA 654
|||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 598 TACATATTCAACCCACCCATCTCGTCTATTCCTCTAGAGCAGCTACCTGGTGGCGATATA 657
Query 655 ATTAAAGGTGTGTTTCAAATCGCCAAAAGTGTCGTCAAAGCCACCGTAGCCATGGCCTTA 714
||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 658 ATTAAAGGTTTGTTTCAAATCACCAAGAGTGTCGTCAAAGCCACCGTAGCCATGGCCTTA 717
Query 715 ACCGATCTACAGGTTCCAATAGACGATCCAAAGACAGCATCATGGATACCTTATTTATAC 774
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 718 ACCGATCTACAGGTTCCAAAAGACGATCCAAAGACAGCATCATGGATACCTTATTTATAT 777
Query 775 GTGAATCCAGCAGATCCAATTTGTGCAGGATACATCGATTACTTCAGACACAAAACCTTC 834
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTGAATCCAGCAGATCCAATATGTGCAGGATACATCGATTACTTCAGACACAAAACCTTC 837
Query 835 ATGTCTGAGATCGGAGCAAGCGACATTGAGAGAACCGGTGCTAGAAAGTCAGTTAGGAGT 894
||||||||||| ||||||||| |||| ||||||| |||||||||||| ||||||||||||
Sbjct 838 ATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATCGGTGCTAGAAAATCAGTTAGGAGT 897
Query 895 CTATTGGTGGGAAGAAAAGGAAAAAC-ATTATCATCGGATTTGTCATCGGAACCTCTTCA 953
|||||||||||||||| ||||||| | || | | ||||||||||||||||||||||| ||
Sbjct 898 CTATTGGTGGGAAGAAGAGGAAAA-CTATCACCGTCGGATTTGTCATCGGAACCTCTCCA 956
Query 954 CCTTCTTCCATCAGCGGATATGACTGTAAACAAGAACAAACCGACTAAGTCTACGACAGC 1013
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 CCTTCTTCCATCAGCAGATATGACTGTAAACAAGAACAAACCGACTAAGTCAACGACAGC 1016
Query 1014 TCATGGACTTCACCAATGGTGGGAGCGAGACTCGACACTGAGGGCAAATTGGGAAAGCTG 1073
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1017 TCACGGACTTCACCAATGGTGGGAGCGAGACTCGACACTGAGGGAAAATTGGGAAAGCTG 1076
Query 1074 CTGCATTAGACCTTACCCTGAAGACAAATTGGAGCAATTGACCCTCCAATAA 1125
|||||| |||||||||| ||||| ||||||||||||| ||||| | ||||||
Sbjct 1077 CTGCATCAGACCTTACCATGAAGGCAAATTGGAGCAACTGACCATACAATAA 1128
> AT5G24220.1 | Symbols: | Lipase class 3-related protein | chr5:8225861-8227551
FORWARD LENGTH=1131
Length=1131
Score = 1158 bits (627), Expect = 0.0
Identities = 980/1147 (85%), Gaps = 38/1147 (3%)
Strand=Plus/Plus
Query 1 ATGGGACGAGG--CT-TCA-GAAAAAGATTAGGAGGA--A-AAGCGATAGCTTCAGA--- 50
||||||||||| || ||| |||| || |||||||| | || ||| || |||||
Sbjct 1 ATGGGACGAGGTTCTCTCAGGAAATTGA-TAGGAGGAGGAGGAGAGATGGCCTCAGACTC 59
Query 51 AGATACAGATACTTTCAGCATTTTTGGCCCCTTCCATCTTACATCTATTGACTGGACCAA 110
||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 60 AGATAGAGACGTTTTCAGCATCTTTGGCCCCTTCCATCTTACATCTATTGATTGGACCAA 119
Query 111 TCCGTACCATCGAACTTCAGTGGCATCAAGTTTGGTAAATGGAGTGTACACATTGGAAGC 170
| ||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||| |
Sbjct 120 TTCGTACCATCGAACGTCAGTAGCATCAAGTTTAGTAAATGGAGTGTACACAATGGAA-C 178
Query 171 -GGACAGGCTTGAGGAACGGGTAGGTTCTGAAGCTCTAGCCAAGCCCTGGTGGGAATTTT 229
||||| || ||| ||||||||||||||||| | | ||||| |||||||||||| ||||
Sbjct 179 GGGACAAGCAAGAGAAACGGGTAGGTTCTGAATCACGAGCCATGCCCTGGTGGGATTTTT 238
Query 230 TCCACTTCACTTTACTCGAAACCTTGAACGACGA-T--GACAGCTCCATATATGGTGCCA 286
|| ||||| ||||| |||||||||||| |||||| | |||||||||||||| |||||
Sbjct 239 TCAACTTCTCTTTAGTCGAAACCTTGATCGACGACTACGACAGCTCCATATACGGTGCTG 298
Query 287 TTTTCGAATACGAGCTATACAACCTTTACGAAAATACCCCTCATGTGAAA--G-TTCCAC 343
||||||||||| |||| | |||||||| | |||||||| | |||| |||| | |||||
Sbjct 299 TTTTCGAATACAAGCTCTCCAACCTTTGCCAAAATACCTCACATGCGAAAGCGCCTCCAC 358
Query 344 GCTATGTGATTGCCTTCCGCGGCACGGTTTTAAAGGGAAAAACTTGGAAGTTTGATTTGA 403
| ||||||||||| |||||||||||| | || || | | ||||||| | |||| |||
Sbjct 359 GTTATGTGATTGCATTCCGCGGCACGATCCTAGAGTCAGATACTTGGATGACTGATGTGA 418
Query 404 AACTTGACCTCAAATGCATCTTCAACACCCTCCATCAAGGTAATAGGTCTATGTACGCCC 463
||| | | ||||||| | |||||||||||||||| |||| ||||||| || | |||
Sbjct 419 AACATAATCTCAAATTTAGCTTCAACACCCTCCATGAAGGCGGTAGGTCTTTGCAGGCCA 478
Query 464 TGAAC--GCAGTCCGCCGTATGGTGGATAAACACAACCATTCAGCTATCTGGCTTGCTGG 521
| || ||| | ||| |||||||||| ||||||| | |||||||||||||||||||
Sbjct 479 T--ACGAGCAATACGCAGTATGGTGGACAAACACAGTGAAGCAGCTATCTGGCTTGCTGG 536
Query 522 ACACTCATTGGGAGCCGCCCTAGTGTTGTTGGCTGGAAAGACCATGACTAGGGTTGGATT 581
|||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 537 ACACTCTTTGGGAGCCGCCCTAGTGTTGCTGGCTGGAAAGACCATGACAAGTTTTGGATT 596
Query 582 CTTCCTCGAAAGTTACATATTTAACCCACCCATCTCTTCTATTCCTCTAGAGCAGCTACC 641
| |||||||||||||||| || |||||||||||||| | |||||||||||||||| ||||
Sbjct 597 CCTCCTCGAAAGTTACATCTTCAACCCACCCATCTCGTGTATTCCTCTAGAGCAGTTACC 656
Query 642 CGGGGGCGATATAATTAAAGGTGTGTTTCAAATCGCCAAAAGTGTCGTCAAAGCCACCGT 701
||||| | | ||||||||||||||||||| || |||| | |||||||||||| |||||
Sbjct 657 TGGGGGAAAAAAAATTAAAGGTGTGTTTCAATTCACCAAGACTGTCGTCAAAGCTACCGT 716
Query 702 AGCCATGGCCTTAACCGATCTACAGGTTCCAA-TAGACGATCCAAAGACAGCATCATGGA 760
||| |||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 717 AGCTATGGTCTTAACCGATCTACAGGTT-CAAGAAGACGATCCAAAAACAGCATCATGGA 775
Query 761 TACCTTATTTATACGTGAATCCAGCAGATCCAATTTGTGCAGGATACATCGATTACTTCA 820
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 776 TACCTTATTTATACGTGAACCCAGCAGATCCAATATGTGCGGGATACATCGATTACTTCA 835
Query 821 GACACAAAACCTTCATGTCTGAGATCGGAGCAAGCGACATTGAGAGAACCGGTGCTAGAA 880
||||||||||||||||||||||||| ||||||||| |||| ||||||| ||||||| |||
Sbjct 836 GACACAAAACCTTCATGTCTGAGATAGGAGCAAGCCACATCGAGAGAATCGGTGCTGGAA 895
Query 881 AGTCAGTTAGGAGTCTATTGGTGGGAAGAAAAGGAAAAACATTATCATCGGATTTGTCAT 940
|||||||||||||||||||| |||||| || ||| |||||| |||||||||
Sbjct 896 AGTCAGTTAGGAGTCTATTGATGGGAA-AAT--------CATCATCATCAGATTTGTCAA 946
Query 941 CGGAACCTCTTCACCTTCTTCCATCAGCGGATATGACTGTAAACAAGAACAAACCGACTA 1000
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 947 CGGAACCTCTTCACCTTCTTCCATCAGCAGATATGATTGTAAACAAGAACAAACCGACTA 1006
Query 1001 AG-TCTACGACAGCTCATGGACTTCACCAATGGTGGGAGCGAGACTCGAC-ACTGAGGGC 1058
|| | || |||||||||||||||||| ||||||||||||||||||||| | | ||||||
Sbjct 1007 AGGT-TATGACAGCTCATGGACTTCATCAATGGTGGGAGCGAGACTCGGCCA-TGAGGGA 1064
Query 1059 AAATTGGGAAAGCTGCTGCATTAGACCTTACCCTGAAGACAAATTGGAGCAATTGACCCT 1118
||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||| |
Sbjct 1065 AAATTGGGAAAGCTGCTGCATCAGACCTTACCCTGACGGCAAATTGGAGCAACTGACCAT 1124
Query 1119 CCAATAA 1125
||||||
Sbjct 1125 ACAATAA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5