BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894311
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24210.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 780 0.0
AT5G24200.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 331 7e-90
> AT5G24210.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:8217335-8219619 FORWARD LENGTH=1355
Length=1355
Score = 780 bits (422), Expect = 0.0
Identities = 564/630 (90%), Gaps = 19/630 (3%)
Strand=Plus/Plus
Query 9 GGAACAATTTGTACCACCGAACCACATTGATGTCATGTTTGGTGCAAGGAGTTTACGCAA 68
||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct 226 GGAACAATTTGTATCACCGAACCACAGTGGCCTCATGTTTGGTGCAAGGAGTTTACGCAA 285
Query 69 TGGAAAGAGACA-GGaaaaaaaaCGAAATGGTTCCGAGTCATTAGCCACACCTTGGTGGA 127
||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 286 AGGAAAGAGACAGGGAAAACAACCGAAATGGTTCCGAGTCATTAGCCACACCTTGGTGGA 345
Query 128 AAAGTTTCAACTTCAGTTTAGATGAAAGTGAAATCCTATATGACGCACGTGACGGCTCCA 187
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 AGAGTTTCAACTTCACTTTAGATGAAAGTGAAATCCTATATGACGCATTTGACGGCTCCA 405
Query 188 TATACGGTGCTGTCTTCGAAAACGTGATCAATTATGAGAATACCCCGGACTTG--A-TAG 244
||||||||||||||||| ||||| ||||||||||||||||||||||| ||| | | |||
Sbjct 406 TATACGGTGCTGTCTTCCAAAACATGATCAATTATGAGAATACCCCGAACTCGATAGTAG 465
Query 245 TACCTCCGCGTTACGTGATTGCATTACGCGGAACTGCCCCAACT-A--TGAATGA-TGTG 300
|||||||||||||||||||||| ||||| ||||||| ||||| | | ||| ||| || |
Sbjct 466 TACCTCCGCGTTACGTGATTGCGTTACGGGGAACTGTCCCAAGTGATGTGAGTGATTG-G 524
Query 301 TTACATAACATTCGT-TTACCATTCGAGACCCTCCATCACGGAGATAGGTC-TCA-GCAT 357
||||||||| ||| || | |||||| |||||| ||| | || | | | | ||||
Sbjct 525 ATACATAACAGCCGTATT-GTACTCGAGAAACTCCATGGCGGGGGTAAG-CAT-ATGCAT 581
Query 358 GTCACT-GAAGAAATCCATTCTTTTGTGGCCAAACACGGAAACACAGCTGTCTGGATCGC 416
|||| | ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 GTCATTAGAA-AAATCTATTCTTTGGTGGCCAAACACGGAAACACAGCTGTCTGGATCGC 640
Query 417 TGGACATTCTCTAGGAGCTGGCCTGGCACTACTCGCCGGAAAGGACATGGCCATGTCTGG 476
|||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 641 TGGACACTCTTTAGGAGCTGGCCTGGCACTACTCGCGGGAAAGGACATGGCCATGTCTGG 700
Query 477 ACTCCCTGTTGAGGCTTACATCTTCAACCCACCTATCTCCTTGATTCCTCTAGAGCAGTA 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 ACTCCCTGTTGAGGCTTACATCTTCAACCCACCTATCTCCTTGATTCCTCTAGAGCAGTG 760
Query 537 CGGTTACAATCAC-ACACTTAATAGTGTGTATCGATTTACCAGGGATATCTTCAAAGCTG 595
||||||||||||| | ||||||| |||||||||| | ||||||||| ||||||||||||
Sbjct 761 CGGTTACAATCACGA-ACTTAATTTTGTGTATCGACTCACCAGGGATCTCTTCAAAGCTG 819
Query 596 GCATAGCCAAAGTCCTAGACCTTGATGAGG 625
|||||||||||||| |||||||||||||||
Sbjct 820 GCATAGCCAAAGTCGTAGACCTTGATGAGG 849
Score = 455 bits (246), Expect = 4e-127
Identities = 280/296 (95%), Gaps = 3/296 (1%)
Strand=Plus/Plus
Query 642 CAATTCTGATGTAATATGCTCAGAATATATTGGTTATTTCAATCACGTAGTCAAC-ATGA 700
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 909 CAA-TCTGATGTAATATGCTCAGAATATATTGGTTATTTCAATCACGTAGTCA-CTATGA 966
Query 701 CGGAGGCGGGACTCGGTGAGATTTCGAGGTTGGCTAATGTATACTCAGTTAGGCGTATGT 760
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 967 CGGAGGCGGGACTCGGTGAGATTTCGAGGTTGGCTAGTGGATACTCAGTTAGGCGTATGT 1026
Query 761 TCCTCGGAGACGGAGAAAATTGGTCCTCGTCTTCTTCACCAGATCATCTTCATTTTCTTC 820
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1027 TATTCGGAGACGGAGAAAATTGGTCCTCGTCTTCTACACCAGATCATCTTCATTTTCTTC 1086
Query 821 CGTCGGCCTTTATGATGGTAAACAAGACTGAATCGTCGGAGTTTTACCATAATCATGGGA 880
|||||||||||||||| ||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 1087 CGTCGGCCTTTATGATTGTAAACAAGACTGAAGCGTCGGAGTTTTATAATAAACATGGGA 1146
Query 881 TTCATCAATGGTGGAATCATATGCTTCAACAATTTACAACGTTTAATTCATACTAG 936
|||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||
Sbjct 1147 TTCATCAATGGTGGAATCATATGCTTAAACAATCTACAACGTTTAGTTCATACTAG 1202
> AT5G24200.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:8203003-8205793 FORWARD LENGTH=1390
Length=1390
Score = 331 bits (179), Expect = 7e-90
Identities = 498/645 (77%), Gaps = 49/645 (8%)
Strand=Plus/Plus
Query 9 GGAACAATTTGTACCACCGAACCACATTGATGTCATGTTTGGTGCAAGGAGTTTACGCAA 68
|||||||||||||||||||| | ||||| | |||||||| ||||||||||| ||| |||
Sbjct 250 GGAACAATTTGTACCACCGAGCGTCATTGGTATCATGTTTAGTGCAAGGAGTGTACACAA 309
Query 69 TGGAAAGAGACAGG-aaaaaaaaCGAAATGGTTCCGAGTCATTAGCCACACCTTGGTGGA 127
||||| |||| ||| || |||| || |||||| || ||| ||| | ||||||||||
Sbjct 310 TGGAACGAGATAGGCAACAAAACCGGTGTGGTTCTGACTCAAAAGCTAGACCTTGGTGG- 368
Query 128 AAAG-TTT-CAACTTCAGTTTAGATGAAAGTGAAATCCTATA-TGACGCACGT-GACGGC 183
| ||| || |||| |||| | || || || || |||||| | || |||
Sbjct 369 -GCGTTTTACAGGTTCACTTTATA-CCAA---CAA--CT-TAGGGACGCA-TTAGATGGC 419
Query 184 TCCATATACGGTGCTGTCTTCGAAAACGTGATCAATTATGAGAATAC-CCCGGACTTGAT 242
||||||||||| || || ||| | |||| |||||||| ||||||| ||| ||| |||
Sbjct 420 TCCATATACGGGGCCGTTTTCCAGAACGACATCAATTACCAGAATACTCCC-AACTCGAT 478
Query 243 AGTACCTCCGCGTTACGTGATTGCATTACGCGG-A--A-C-T--GCCC-C-AACTAT-GA 292
||||||||| |||||| | ||||| ||||| || | | | | |||| | |||||| |
Sbjct 479 AGTACCTCCACGTTACATTATTGCGTTACGTGGAACGATCTTAAGCCCACAAACTATGGC 538
Query 293 ATGATG-TGTT-A-CATAACATTCGT-TTACCATTCGAGACCCTCCATCACGGAGATAGG 348
|| || |||| | | |||||||||| | || ||||||| |||| | | ||| | |||
Sbjct 539 TTG-TGATGTTCAGCTTAACATTCGTATCGCC-TTCGAGAACCTCTACCGCGGGGGTAGA 596
Query 349 TCTCAGCATGTCACTGAAGAAATCCATTCTTTTGTGGCCAAACACGGAAACACAGCTGTC 408
| | ||| | || | ||| ||| || | ||||||||||| | | |||||||||||| ||
Sbjct 597 TTTGTGCAGGCCATTCAAGCAATGCAATATTTTGTGGCCACATATGGAAACACAGCTATC 656
Query 409 TGGATCGCTGGACATTCTCTAGGAGCTGGCCTGGCACTACTCGCCGGAAAGGA-CATGGC 467
|||||||||||||| ||||||||||||||||| ||||||||||| || || || ||||||
Sbjct 657 TGGATCGCTGGACACTCTCTAGGAGCTGGCCTTGCACTACTCGCGGGGAA-GATCATGGC 715
Query 468 CATGTCTGGACT-CCCTGTTGAGGCTTACATCTTCAACCCACCTATCTCCTTGATTCCTC 526
||||| |||| | |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 CATGTATGGA-TGCCCTGTCGAGGCTTACATCTTCAATCCACCTATCTCCTTGATTCCTC 774
Query 527 TAGAGCAG-TAC-GGTTACAATCAC-ACACTTAA-TAGTGTGTATC-GATTTACCAGGGA 581
|||||||| || || | | | | | ||||| | ||| | || || | | |||||
Sbjct 775 TAGAGCAGCTAGTGG--AGAGTGAGGAT-CTTAAAT-GTGCGG-TCCGACTCGCTAGGGA 829
Query 582 TATCTTCAAAGCTGGCATAGCCAA-AGTCCTAGACCTTGATGAGG 625
|||| ||||||| |||||||| || ||||||||||||| ||||||
Sbjct 830 TATCCTCAAAGCCGGCATAGC-AAGAGTCCTAGACCTTAATGAGG 873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5