BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894329

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G24316.1 | Symbols:  | proline-rich family protein | chr5:82...   424    4e-118


> AT5G24316.1 | Symbols:  | proline-rich family protein | chr5:8279179-8279964 
REVERSE LENGTH=501
Length=501

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 321/364 (88%), Gaps = 11/364 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGTTGGTGATACTAGTATCCTTCTTGCTCGTTCTCCCAATGTTTTCTTCAGGGATC  60
            |||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  51   ATGAAGCTAGTGATACTAGTATCTTTCTTGCTCGTTCTCCCAATGTTTTCTTCAGGGATC  110

Query  61   GTTGAGACTTTGCATCTTGACAACGTCAACCGCAAGGTTAAAGAGTTGGTCATGAGTGGA  120
            |||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct  111  GTTGAGACTTTGCATCATGACAACATCAACCGCAAGGTTAAAGAGATGGTCATGAATGGA  170

Query  121  AGAAGAATCGATCTGGAGATGGACTACACTGGGCCGCATCCACGACCGCCCAACCCAGGC  180
            ||||||||||||||||||||||||||| |||||||||||| | |||| ||||| |||  |
Sbjct  171  AGAAGAATCGATCTGGAGATGGACTACGCTGGGCCGCATCTAAGACCTCCCAAGCCAT-C  229

Query  181  CCAGCCAACCCTACAAATCCGAG-AACACAAGTTGATGAGGTTGTGACAAAGGAACCAAC  239
            |  |  | |||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct  230  C--G--A-CCCTACAATTCC-AGGAACACAAGTTGATGAGGTTGTGACAAAGGAACCAAC  283

Query  240  GGAGTATATCATAGA---CTATGGGGACTGGTCCCCACGTCCAGTCACACCACGACCGAG  296
             |  |||| || |||   ||||||||||||||| ||| | ||| || ||  |||||| | 
Sbjct  284  TGTCTATAACAAAGAAGACTATGGGGACTGGTCTCCAAGACCAATCCCAAAACGACCAAT  343

Query  297  GCCATATGTAcctcctcctcctcctcctcctTCACGACGACCTCCCTTCACCACAAATCA  356
            ||||||||||||||||||||||||||| ||  ||||||||||||| ||||||||||||||
Sbjct  344  GCCATATGTACCTCCTCCTCCTCCTCCACCGACACGACGACCTCCTTTCACCACAAATCA  403

Query  357  CTAG  360
            ||||
Sbjct  404  CTAG  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5