BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894331
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24320.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2883 0.0
> AT5G24320.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:8284436-8288039 REVERSE LENGTH=2582
Length=2582
Score = 2883 bits (1561), Expect = 0.0
Identities = 1946/2121 (92%), Gaps = 69/2121 (3%)
Strand=Plus/Plus
Query 22 gaagaagaagaagaaACTCGATTTTTCGATGCTCTCGAAGAAATCGCATCTTGTTCAAGT 81
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 79 GAAGAAGAAGAAGAGTCTCGATTTTTCGATGCTCACGAAGAAATCGCATCTTGTTCAAGT 138
Query 82 ACAAGTCTTTGTAGAATCGAGTACGATGAATCTCTATCGTCGATTTCTGGGGATTTTCGA 141
| | ||||| || | | | ||||||| ||||||||||||||| || |||||
Sbjct 139 -C----C-TTGTA-AA---A-T-C---GAATCTCCATCGTCGATTTCTGGAGAATTTCGT 183
Query 142 TACGATGTTTGGATCAAAAGCCCAGGAAACACTGAGGAGCGTCGTCAGAAGTTTTTGAAC 201
||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||
Sbjct 184 TACGATGTTTGGATCAAAAGCCCTGGTAACACTGAGGAGCGTCGTGAGAAGTTTTTGAAG 243
Query 202 TGGATGGGTTTAAGTAGTACTGTGAAGGCAGAT--AAATCAGGTAATGTGAATCGTTTGT 259
||||||||||||||||||||||| || | | || ||||||||||||||| |||| || |
Sbjct 244 TGGATGGGTTTAAGTAGTACTGTAAACG-A-ATCGAAATCAGGTAATGTGTATCGGTTAT 301
Query 260 CGAGCTCGGTTAATGAATCAGCGGTTTTGATGGGTTTGAAATCTGATGATGATGAGTTTA 319
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 302 CGAGCTCGGTTAACGAATCAGCGGTTTTGATGAGTTTGAAATCTGATGACGATGAGTTTA 361
Query 320 GCTCTTGTCGTTGTGATTCTTCTGTGTTTAGTCCAAGTGAGA--GT-G-TAGA----T-- 369
|||||| ||||||||| ||| | |||||||||||||||| || | |||| |
Sbjct 362 GCTCTTCTCGTTGTGA---TTC--T-TTTAGTCCAAGTGAGAGTGTAGATAGAGTTGTGA 415
Query 370 A-GA-A--TTGTG-AAAGAGG-A--AGAAGTAGATAGTCGAATGGTTTTGAGGAATTTGG 421
| || | ||||| ||||||| | ||||||||||||| | |||||||||||||||||||
Sbjct 416 ATGAGAGTTTGTGTAAAGAGGAAGGAGAAGTAGATAGTGGTATGGTTTTGAGGAATTTGG 475
Query 422 GTTTTGGtgatgatgatgatgatgaGATTAGCTCTAGTCTTTGTTCTGTATTGTCATCAC 481
||||| || |||||||| | ||| ||||||||||||||||||||| ||| ||||| |
Sbjct 476 GTTTT-GT--TGATGATG--G-TGATATTAGCTCTAGTCTTTGTTCTTTATCATCATCTC 529
Query 482 CTGTATCGGGTTCAACGGATAGGTTTGTGAAGGAAAATGGTG-----AAG-CGTTACCAG 535
||||||| || | || | | ||||||||||| |||||| ||| ||||||||
Sbjct 530 CTGTATC-GGAT-AA--G--A---TTGTGAAGGAACATGGTGAACCTAAGTTGTTACCAG 580
Query 536 ACCCGATGGTTGCTGCGGAGCAAAGGGATGTAGGTGGGATTATGAAGAGGGTTAAGGAGA 595
||||||||||||||| |||| || |||| ||| |||||||||||||||||||||||||||
Sbjct 581 ACCCGATGGTTGCTGAGGAGGAACGGGAAGTAAGTGGGATTATGAAGAGGGTTAAGGAGA 640
Query 596 AATGGTTGAGTCGGCTGTACAAAGTGCGGAGTAAGCAG-AGTGC--G-GGAGATGATAAT 651
|||||||||||||| ||||||||||||||| |||| | ||||| | ||||||||||||
Sbjct 641 AATGGTTGAGTCGGTTGTACAAAGTGCGGAACAAGC-GAAGTGCGGGAGGAGATGATAAT 699
Query 652 GGTGGTGAAGTTGCGGTTTGCGGGAGTAGGATTGAGAGAGTTAAGGTGAAAGAGTATAAG 711
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 700 GGCGGTGAAGTTGCGGTTTGCGGGAGTAGGATTGAGAGAGTGAAGGTGAAAGAGTATAAA 759
Query 712 AAAGAGGCTAAAGAGCTTTCTGCTCTTTTTAAAGGTCAAGAGATACAAGCTCATGAGGGA 771
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 760 AAAGAGGCTAAGGAGCTTTCTGCTCTTTTTAAAGGTCAAGAGATACAAGCTCATGAAGGA 819
Query 772 GCGATTCTCGCTATGAAGTTTAGTCCTGATGGGAGGTACCTTGCCAGTGCCGGTGAAGAC 831
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 820 GCGATTCTCGCTATGAAGTTTAGTCCTGATGGGAGGTATCTTGCGAGTGCTGGTGAAGAT 879
Query 832 GGGGTTTTGCGGGTTTGGAGTGTTGTTGAAGATGAAAGATGTGAAGAACATGACGTTCCT 891
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 880 GGGGTTTTGCGGGTTTGGAGTGTTGTTGAAGACGAAAGATGTGAAGAACATGATGTTCCT 939
Query 892 AAGATTGATCCTTCTTGTATATACTTTGAAGTGAGCAAACTCTCTGAGTTGAGACCTGTG 951
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 940 AAGATTGATCCTTCTTGTATATACTTTGAAGTGAGTAAACTCTCTGAGTTGAGACCGGTG 999
Query 952 GCTGTAGAAAAGGATGGTATTACTGGTTCTTTGATGAGTCCAAGGAAGACAACAGAGTCT 1011
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1000 GCTGTAGAAAAGGATGGGATTACTGGTTCGTTGATGAGTCCAAGGAAGACAACAGAGTCT 1059
Query 1012 GCTTGTGTCATTATTCCCCCAAAGATTTTCCGGGTTCTTGATAAACCACTTCACGAGTTT 1071
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1060 GCTTGTGTTATTATTCCCCCAAAGATTTTTCGGGTTCTTGATAAACCGCTTCACGAGTTT 1119
Query 1072 CTTGGTCATAGTGGTGATATCCTTGACATCTCATGGTCCAAGAACAATCGTCTGTTGTCA 1131
|| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1120 CTCGGTCACAGTGGTGATATCCTTGATATCTCTTGGTCCAAGAACAATCGTCTGTTGTCA 1179
Query 1132 GCTTCAGTAGACAATAGTGTTCGGCTTTGGCAGATCGGCCATGAGGACTGTCTTGGCATC 1191
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 1180 GCTTCAGTAGACAATAGTGTTCGGCTTTGGCAGATCGGCTGTGAGGACTGTCTTGGAATC 1239
Query 1192 TTTTCTCACAGTAACTACGTTACGTCTGTTCAGTTTAACCCGGTTGATGATGATCACTTC 1251
|| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1240 TTCTCTCACAATAACTACGTTACATCCGTTCAGTTTAACCCGGTTGATGATGATCACTTC 1299
Query 1252 ATCAGTGGTTCGATAGATGGAAAAGTACGTATCTGGTCAGCTTCTCAGTGCCAAGTTGTA 1311
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1300 ATCAGTGGTTCCATAGATGGAAAAGTTCGTATCTGGTCAGCTTCACAGTGCCAAGTTGTA 1359
Query 1312 GATTGGGCCGACGCTAGAGGCATTGTAACCGCAGTTTGTTATCGCCCAGATGGGCAGGCA 1371
||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1360 GATTGGGCCGATGCTAGAGGCATTGTAACCGCAGTTTGTTATCAACCTGATGGGCAGGCA 1419
Query 1372 GTGATTATCGGAACTTTGACAAGCGATTGTCGCTTCTACAATGTATCAGGCCACTGCCTT 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 GTGATTATCGGAACTTTGACAAGCGATTGTCGCTTCTACAATGTATCAGGCCACTGCCTT 1479
Query 1432 CAACTCGATGGTCATATATGTCTGCACAACAAAAAGAAGTCGTCAAATAAACGAATAATC 1491
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1480 CAACTTGATGGTCATATATGTCTGCACAACAAAAAGAAGTCGTCGAATAAACGAATAATC 1539
Query 1492 GGCTTTCAGTTTCTTCTGCAGTTTGATTTTACCGACCCAAGCAGAGTCATGGTGGCATCC 1551
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1540 GGCTTTCAGTTTCTTCTGCAGTTTGATTCTACTGACCCAAGCAGAGTCATGGTGGCATCA 1599
Query 1552 GCAGATTCACAAGTGAGGATCATCAGCGGTCGCAACGTTGTCCACAAATACAAAGGATCT 1611
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1600 GCAGATTCACAAGTGAGGATCATTAGTGGTCGCAACGTTGTCCACAAATACAAAGGATCT 1659
Query 1612 CGAAATGCTGGAAACCAGATATCGGCATCTTTTACAGCAGACGGGAAGCATATAGTATCA 1671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1660 CGAAATGCTGGAAACCAGATATCGGCATCTTTTACAGCAGACGGGAAGCATATAGTCTCT 1719
Query 1672 GCGTGTGACGACTCCTCAGTCTACGTCTGGAACTGCGTTGGACACGACCCTGAACAGCCA 1731
||||||||||| || || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1720 GCGTGTGACGATTCATCGGTCTACGTCTGGAACTGCGTTGGACACGACCCTGAACAGTCG 1779
Query 1732 TCTCCTGGTTTTTTCTCTCACACCAAACGACTTAAAATCCGATCGTTCGAAAAATTCTCT 1791
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1780 TCTCCTGGTTTTTTCTCTCACACCAAACGACTTAAAATCCGATCATTCGAAAAATTCTCT 1839
Query 1792 GCAGATGTCTCAGTCGCTATCCCGTGGTGTGGATTTACGCCTGTACTCTCCGGCGGATCA 1851
|| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1840 GCGGATGTTTCAGTAGCTATCCCGTGGTGCGGATTTACGCCTGTACTCTCCGGCGGATCC 1899
Query 1852 GAGCTATCGCCATCGCTTTTCTCATTGGGGAGAGAGTACGTTCTCGATTCTCCCAAGGGA 1911
||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||
Sbjct 1900 GAGCTATCGCCATCGCTCTTCTCATTAGGGCGCGAGTACGTTCTCGATTCTCCCAAGGGA 1959
Query 1912 TCCGCCACTTGGCCGGAGGAGAAGCTAGCGAGCTCGTTTTCTCCAGTGAAAGCGATCCGT 1971
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1960 TCTGCCACTTGGCCGGAAGAGAAGCTAGCGAGCTCGTTTTCTCCGGTGAAAGCGATCCGT 2019
Query 1972 AGATCACATTACAAATTCCTCCGATCGTCGTGCCGGAGAACGTCGGAGTCATCTCATCTC 2031
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2020 AGATCGCATTACAAATTCCTCCGGTCTTCGTGCCGGAGAACGTCGGAGTCATCTCATCTC 2079
Query 2032 TGGGGATTGGTTATAGTCACCGGCGGGTGGGATGGACGGATCAAATTGTTTCACAACTAT 2091
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2080 TGGGGATTGGTTATAGTCACCGGTGGTTGGGATGGACGGATCAAATTGTTTCACAACTAT 2139
Query 2092 GGTTTGCCTGTTCCCGTTTGA 2112
|||||||||||||||||||||
Sbjct 2140 GGTTTGCCTGTTCCCGTTTGA 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104718336870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5