BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894371
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24630.6 | Symbols: BIN4 | double-stranded DNA binding | chr... 1046 0.0
> AT5G24630.6 | Symbols: BIN4 | double-stranded DNA binding | chr5:8432384-8436170
REVERSE LENGTH=1875
Length=1875
Score = 1046 bits (566), Expect = 0.0
Identities = 803/907 (89%), Gaps = 57/907 (6%)
Strand=Plus/Plus
Query 176 ATGATAGTCCTTATAGAGAATCTGAAGCCGTTTCGTCTCTTCCTTTGCCTGATGATGACG 235
|||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||
Sbjct 466 ATGATAGTCCTTATAGGGAATCTGAAGTCATTTCGTCTCTTCCTTTGCCTGATGATGACG 525
Query 236 GTGACGACACCACGATTCTTGAGAAAGAATCTGTGGAGTCTCAAGAATCTGTCGAGTTAC 295
|||||| || | ||| | | ||| | ||| | ||||||||| ||| |
Sbjct 526 GTGACG-----AC-A---TTGTG---G-TTCT-T-GAG--AC-AGAATCTGTGGAG-T-- 564
Query 296 TACTGTCTAGGAAGAATTCCGAAACGAATCTTGTGATGAAGCAAGTGAGTATCGAGCAGG 355
||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 565 TACTGACTAGGAAGAATTCCGAAACGAAGGTTGTGACGAAGCAAGTGAGTATCGAGCAGG 624
Query 356 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTG-A-A-------G--GGG- 403
|||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 625 TGTTTTCTAGAAAGAAGAAAGCAGATGCTAGTCTCAACCTTGAAGATTCGTGTGCAGGGA 684
Query 404 AGCAGAATGGGAACAACGTTGA-TGGGGAAAAACTCTCTACCAAGCATAAGGATGCTCAA 462
|| ||||||| ||||||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct 685 AGGAGAATGGAAACAACGTTGACT-GTGAAAAACTCTCTAGCAAGCATAAGGATGCTCAA 743
Query 463 GGAGGAGATGATTCTGTATGGCTGGTCTCATCTGATTCTGAACCATCCTCTAGTGCTCCG 522
||||||| ||||||||||||||| ||||||||||||||||| |||| | | | ||||
Sbjct 744 GGAGGAGCTGATTCTGTATGGCTTGTCTCATCTGATTCTGAGCCAT-C-C---T-CTCCT 797
Query 523 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGAGGATTTTGTTCTTGATGCTACA 582
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 798 ATAAAGCAGGAAGTGACTGTGTCAACTGAAAAGGATGCGGATTTTGTTCTTGAAGCTACA 857
Query 583 GAGGAAGAACCTGCAGTTAAGAAAGTTCGAAAGGAAAAATCTCCAAAAACAAAGTCAAAG 642
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 858 GAGGAAGAACCAGCAGTTAAGACAGTTCGAAAGGAAAAATCTCCAAAAACAAAGTCAAAA 917
Query 643 AGCGGTCGCAAGACACCCAAGGAAGGAAATGGTGCACAGAAAATTTTTAAAAGTGAAGAT 702
||| |||||||||||||||||||||||||| |||||||| ||||||| |||| |||||||
Sbjct 918 AGCAGTCGCAAGACACCCAAGGAAGGAAATAGTGCACAGGAAATTTTAAAAACTGAAGAT 977
Query 703 AAAGTTATTA-ATACCACTATAGCCGAGGAAGTAACAACGGAAAAATCTCCAGAAACAAA 761
|||| || | ||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 978 AAAGATAC-AGATACCACTATAGCCGAGCAAGTAACACCGGAAAAATCTCCAAAAACAAA 1036
Query 762 GTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAGTGCACA-GAAAATTTTTAAAA 820
||| ||||||||||||||||||||||| ||||||||| ||||||| |||| |||| ||||
Sbjct 1037 GTCAAAAAGCAGTCGCAAGACACCCAAGGAAGAAAATTGTGCACAAGAAA-TTTTAAAAA 1095
Query 821 GTGAAGATAAAGATACAGATAC-----CA----C--T-ATAGCCGAGGAAGGAACAACGG 868
|||||||||||||| |||||| || | | ||||||||||||| ||||||||
Sbjct 1096 CTGAAGATAAAGATAAAGATACAGATACAGATACCATTATAGCCGAGGAAGTAACAACGG 1155
Query 869 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 ATCAGAAGATCAAGCCTTCTTCTGGCTCAAGTTCAAGATTGCCTTTGGTACTTTCTGAGA 1215
Query 929 AGGTGAATCGTACAAAGGTACTTGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 988
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1216 AGGTTAATCGTACAAAGGTACTCGTTGAATGTGAAGGTGACTCGATAGATTTGAGTGGAG 1275
Query 989 ACATGGGGGCTGTTGGACGAGTAATTGTTTCAGACACAACCGGAGACATGTACTTGGACT 1048
||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||
Sbjct 1276 ACATGGGGGCTGTTGGACGCGTGGTTGTTTCAGACACAACCGGGGACATGTACTTGGACT 1335
Query 1049 TGAAAGG 1055
|||||||
Sbjct 1336 TGAAAGG 1342
Score = 662 bits (358), Expect = 0.0
Identities = 385/398 (97%), Gaps = 2/398 (1%)
Strand=Plus/Plus
Query 1083 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTAGTTAACGTAGG 1142
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1340 AGGAACCATATATAAATCAACAATCATTCCATCCAGAACATTTTGCGTTGTTAACGTAGG 1399
Query 1143 TCAGACAGAGGCAAAGATTGAAGCTATTATGAATGACTTCATACAGCTGACACCACAATC 1202
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1400 TCAGACAGAGGCTAAGATTGAAGCTATTATGAATGACTTCATACAGCTGATACCACAATC 1459
Query 1203 TAATGTGTACGAGGCAGAAACAATGGTAGAAGGCACTCTGGAGGGATTTTCATTCGAATC 1262
|||||| |||||||||||||||||||| |||||||||||||| |||||| | ||||||||
Sbjct 1460 TAATGTCTACGAGGCAGAAACAATGGTGGAAGGCACTCTGGAAGGATTTACGTTCGAATC 1519
Query 1263 AGATGATGAAACTAACAAAAACGCCAAGACTGCT-TCAAAGCCAGCTGATCAAAGTGGAG 1321
||||||||||| |||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 1520 AGATGATGAAAGTAACAAAAACGCCAAGACTGCTGT-AAAGCCAGCTGATCAAAGTGTAG 1578
Query 1322 GCACAGAGGAAGaaaccaacacaaaagccaaacccaaagccaaagcaaaaggcgaaactg 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1579 GCACAGAGGAAGAAACCAACACAAAAGCCAAACCCAAAGCCAAAGCAAAAGGCGAAACTG 1638
Query 1382 ttataggaaaaaagAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TTATAGGAAAAAAGAGAGGAAGACCATCTAAAGAGAAGCAGCCACCAGCAAAGAAGGCTA 1698
Query 1442 GAAATTCTGCCCCTAAGAAGCCAAAATCCAAGAAATGA 1479
|||||||||||||||||||||||||| |||||||||||
Sbjct 1699 GAAATTCTGCCCCTAAGAAGCCAAAAGCCAAGAAATGA 1736
Score = 183 bits (99), Expect = 3e-45
Identities = 119/129 (92%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 741 GGAAAAATCTCCAGAAACAAAGTCTAAAAGCAGTCGCAAGACACCCAAAGAAGAAAATAG 800
||||||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct 890 GGAAAAATCTCCAAAAACAAAGTCAAAAAGCAGTCGCAAGACACCCAAGGAAGGAAATAG 949
Query 801 TGCACAGAAAATTTTTAAAAGTGAAGATAAAGATACAGATACCACTATAGCCGAGGAAGG 860
||||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |||
Sbjct 950 TGCACAGGAAATTTTAAAAACTGAAGATAAAGATACAGATACCACTATAGCCGAGCAAGT 1009
Query 861 AACAACGGA 869
|||| ||||
Sbjct 1010 AACACCGGA 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5