BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894377

Length=1650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52030.2 | Symbols: MBP2, MBP1.2, F-ATMBP | myrosinase-bindi...   108    2e-22


> AT1G52030.2 | Symbols: MBP2, MBP1.2, F-ATMBP | myrosinase-binding 
protein 2 | chr1:19345940-19348668 REVERSE LENGTH=2465
Length=2465

 Score =  108 bits (58),  Expect = 2e-22
 Identities = 136/171 (80%), Gaps = 16/171 (9%)
 Strand=Plus/Plus

Query  647  TGATCAAATCGCTATTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATA-TTCGGTGAG  705
            ||||||| ||  || ||||||||||||||||||||||||||||||||||  || ||| | 
Sbjct  655  TGATCAAGTCATTACTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATCCTT-GGTCAC  713

Query  706  ACGA-ATTCCT-------C----TGGGAAAGAATTTTTGCTCGAGGGTAGAA-ATGGAGG  752
            |||| ||| ||       |    ||||||||||||  ||||||||   | || |||||||
Sbjct  714  ACGACATTACTAGGGAATCCAGCTGGGAAAGAATTCATGCTCGAGTCCA-AATATGGAGG  772

Query  753  AAAGCTTCTTGGGTTCCACGGACGCTCTGGTCAGGCTATTGATGCCATTGG  803
            |||||||||||| ||||| ||||| |||||| | ||| |||||||||||||
Sbjct  773  AAAGCTTCTTGGTTTCCATGGACGTTCTGGTGAAGCTCTTGATGCCATTGG  823



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 81525685080


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5