BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894395

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G52030.2 | Symbols: MBP2, MBP1.2, F-ATMBP | myrosinase-bindi...   309    2e-83


> AT1G52030.2 | Symbols: MBP2, MBP1.2, F-ATMBP | myrosinase-binding 
protein 2 | chr1:19345940-19348668 REVERSE LENGTH=2465
Length=2465

 Score =  309 bits (167),  Expect = 2e-83
 Identities = 326/402 (81%), Gaps = 14/402 (3%)
 Strand=Plus/Plus

Query  10   GCATTCGACGATGGTGTTTTCAATGGCGTGAAGAAAATAATTGTGGGAGAACACATT-GG  68
            ||||||||||||||||||||  |||| ||||||||| ||||||| ||| || || ||   
Sbjct  429  GCATTCGACGATGGTGTTTTTGATGGTGTGAAGAAAGTAATTGTTGGAAAAGAC-TTCAA  487

Query  69   CTGCGTGGCTTATATCAAGATCGAATACGAAAAGGATGGGAAATTTGAAACCCGTGAACA  128
            |   ||  ||||||||||| | |||||||||||||| || ||||| ||||  ||||||||
Sbjct  488  CAATGTAACTTATATCAAGGTTGAATACGAAAAGGACGGAAAATTCGAAATTCGTGAACA  547

Query  129  CGGGAC-AATTCGCAGGG-ATCTAAAAGAGTTTGT-GGTGGATTATCC-AAGTGAATGTA  184
            |||||| || |||| ||| | |||||||||||| |  ||||||||||| || ||||| ||
Sbjct  548  CGGGACTAA-TCGC-GGGCAGCTAAAAGAGTTT-TCAGTGGATTATCCGAA-TGAATATA  603

Query  185  TCACATCCTTTGGTGGAAGCTACGGCCA-TGTTAACGGCTATAAAGCAGTGATGATCAAA  243
            ||||| || |||||||||||||| | || ||||  ||| ||   | ||| | ||||||| 
Sbjct  604  TCACAGCCGTTGGTGGAAGCTAC-GACACTGTTTTCGGTTACGGATCAGCGTTGATCAAG  662

Query  244  TCACTAATCTTCAAAACCTCTTATGGAAGAACCTCTCCAGTACTCGGTGAGACCA-ATTC  302
            ||| || |||||||||||||||||||||||||||||||| | || ||| | || | ||| 
Sbjct  663  TCATTACTCTTCAAAACCTCTTATGGAAGAACCTCTCCAATCCTTGGTCACACGACATT-  721

Query  303  ATTTGGAAATCCAGCTGATAATCAATTCATGCTCGAGGGTAAAAATGGAGGAAAGCTTCT  362
            | | || ||||||||||  ||  ||||||||||||||   ||| ||||||||||||||||
Sbjct  722  ACTAGGGAATCCAGCTGGGAAAGAATTCATGCTCGAGTCCAAATATGGAGGAAAGCTTCT  781

Query  363  TGGATTCCACGGACGCTCTGGTGCTGCTATTGATGCCATTGG  404
            ||| ||||| ||||| |||||||  ||| |||||||||||||
Sbjct  782  TGGTTTCCATGGACGTTCTGGTGAAGCTCTTGATGCCATTGG  823



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5