BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894415
Length=1443
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25110.1 | Symbols: CIPK25, SnRK3.25 | CBL-interacting prote... 1938 0.0
AT5G10930.1 | Symbols: CIPK5, SnRK3.24 | CBL-interacting protei... 992 0.0
> AT5G25110.1 | Symbols: CIPK25, SnRK3.25 | CBL-interacting protein
kinase 25 | chr5:8657626-8659322 REVERSE LENGTH=1697
Length=1697
Score = 1938 bits (1049), Expect = 0.0
Identities = 1304/1422 (92%), Gaps = 38/1422 (3%)
Strand=Plus/Plus
Query 47 ACAGTCGTTACCAATTGGCCCCCACGATGGAAGAAGAACAACAACAACTTCGAGTTCTGT 106
||||||||||||||| |||||| || ||||| ||||| |||||||||||||| ||||| |
Sbjct 175 ACAGTCGTTACCAATCGGCCCCTACAATGGAGGAAGAGCAACAACAACTTCGTGTTCTCT 234
Query 107 TCG-GAAAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGCAAAAGTCTATTAC 165
||| | |||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 235 TCGCG-AAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGGAAAAGTTTATTAC 293
Query 166 GGCAAAGAGATAACAACCGGAGAAAGCGTTGCAATCAAAATCATCAACAAAGATCAAGTC 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 GGCAAAGAGATAACAACCGGAGAAAGCGTTGCAATCAAAATCATCAACAAAGATCAAG-- 351
Query 226 ATCAAACGTGAAGGTATGATGGAACAAATCAAACGAGAGATCTCAATCATGAGACTTGTT 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 -TCAAACGTGAAGGTATGATGGAACAAATCAAACGAGAGATCTCAATCATGAGACTTGTT 410
Query 286 CGTCATCCAAACATCGTCGAATTAAAAGAAGTCATGGCAACAAAAACAAAGATCTTCTTC 345
||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 411 CGTCATCCAAACATCGTTGAGTTAAAAGAAGTCATGGCTACAAAAACAAAGATCTTCTTT 470
Query 346 ATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGTTAAAGGAAAGCTTAAA 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGTTAAAGGAAAGCTTAAA 530
Query 406 GAAGACTCTGCTCGTAAGTACTTCCAACAATTAATCTCAGCCGTTGATTTTTGTCATAGT 465
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAAGACTCTGCTCGTAAGTATTTCCAACAATTAATCTCAGCCGTTGATTTTTGTCATAGT 590
Query 466 AGAGGCGTGTCTCACCGAGATCTAAAACCGGAGAATCTCTTGGTCGACGAGAACGGTGAT 525
|||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct 591 AGAGGCGTTTCTCACCGAGATCTAAAACCGGAGAATCTCTTAGTTGACGAGAACGGAGAT 650
Query 526 CTTAAGGTGTCCGATTTCGGTCTCTCTGCTTTACCTGAACAGATTTTACAAGACGGTTTG 585
|||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 651 CTTAAGGTTTCAGATTTTGGTCTCTCTGCTTTACCGGAACAGATTTTACAAGACGGTTTG 710
Query 586 CTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCGCCGGAGGTTTTGAGGAAGAAAGGT 645
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 711 CTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCACCGGAGGTTTTGAGGAAGAAAGGT 770
Query 646 TACGACGGAGCTAAAGCTGATATTTGGTCGTGTGGTGTGATCTTGTACGTACTTCTCGCC 705
|||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 771 TACGACGGAGCTAAAGGTGATATTTGGTCGTGTGGTATTATCTTGTACGTGCTTCTCGCT 830
Query 706 GGTTTTTTACCGTTTCAAGATGAGAACCTAATGAAAATGTATCGGAAGATCTTCAAATCG 765
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GGATTCTTACCGTTTCAAGATGAGAACCTAATGAAAATGTATCGGAAGATCTTCAAATCG 890
Query 766 GAGTTTGAGTTTCCGCCGTGGTTTTCACCGGAGTCCAAGAGATTGATTTCGAAGCTTTTA 825
|||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 891 GAGTTTGAGTATCCGCCGTGGTTTTCACCGGAGTCCAAGAGGTTGATTTCAAAGCTTTTA 950
Query 826 GTTGTTGATCCTAATAAACGGATCTCGATACCAGCGATTATGAGAACACCGTGGTTTCGT 885
|||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 951 GTTGTTGATCCTAACAAACGGATCTCGATACCGGCGATTATGCGAACACCGTGGTTTCGT 1010
Query 886 AAAAACTTCAACTCTCCGATCGCTTTCAAGATCGATGAGCTCGAGAACCAGAACGTAG-A 944
|||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
Sbjct 1011 AAAAACATCAACTCTCCGATCGAGTTCAAGATCGATGAGCTCGAGATCCAAAACGTAGAA 1070
Query 945 -A-G--------------AC-G--A-AACA-C--CAACAACAACAACACCGGTCTCGCCG 981
| | || | | |||| | ||||||||||||||||||||||||||
Sbjct 1071 GACGAAACACCAACAACAACAGCAACAACAGCAACAACAACAACAACACCGGTCTCGCCG 1130
Query 982 AAGTTCTTTAACGCGTTTGAATTCATCTCCTCGATGTCATCAGGATTCGATTTGTCGAGT 1041
||||||||||||||||||||||||||||| || |||||||||||||| ||| | || |||
Sbjct 1131 AAGTTCTTTAACGCGTTTGAATTCATCTCTTCTATGTCATCAGGATTTGATCTATCAAGT 1190
Query 1042 TTGTTCGAGAACAAAAGGAAGCTGAGCTCTATGTTTACGTCACGGTGGTCGGCGTCGGAG 1101
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1191 TTGTTCGAGAGTAAGAGGAAGCTGAGATCTATGTTTACGTCACGGTGGTCGGCGTCGGAG 1250
Query 1102 ATAATGGCGAAGCTTGAAAGGATAGGGAAAGAGATGAACATGAAGGTTAAGAGGACTAAG 1161
||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1251 ATAATGGGGAAGCTTGAAGGGATAGGGAAAGAGATGAATATGAAGGTGAAGAGGACTAAA 1310
Query 1162 GATTTTAAAGTGAAGATGTTGGGGACAACGGAAGGGAGGAAAGGACAGATCGCGGTGACG 1221
|| ||||| |||||| |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1311 GACTTTAAGGTGAAGTTGTTTGGGAAAACGGAAGGGAGGAAAGGACAGATCGCGGTGACT 1370
Query 1222 GCGGAGGTTTTCGAGGTTGCGCCGCAGGTTGCCGTCGTTGAGTTATGTAAATCGGCGGGA 1281
|| ||||||||||||||||||||| | || |||||||||||||| ||||| |||||||||
Sbjct 1371 GCTGAGGTTTTCGAGGTTGCGCCGGAAGTCGCCGTCGTTGAGTTGTGTAAGTCGGCGGGA 1430
Query 1282 GATACTTTGGAGTATAATCGGTTATAAGAAGAACAAGTCCGGCCGGCGTTGGAGGAGATA 1341
|||||||||||||||||| |||| || |||||||| |||||||| |||||||||||||||
Sbjct 1431 GATACTTTGGAGTATAATAGGTTGTATGAAGAACATGTCCGGCCAGCGTTGGAGGAGATA 1490
Query 1342 GTTTGGTCGTGGCACGGTGATAATCATAATAACAATATTGTTAGTAATAAGAATAATAAT 1401
|| ||||||||||||||||||||||||||||| |||||||||| | | | ||||
Sbjct 1491 GTGTGGTCGTGGCACGGTGATAATCATAATAATAATATTGTTA--AG-A-G--TAATG-- 1542
Query 1402 GTTAATTATATTAGTGATGATAATTCTGGTAGTGACTGTTAA 1443
|| |||||| |||||||||| ||||||||||||||||| |||
Sbjct 1543 GT-AATTATGTTAGTGATGAAAATTCTGGTAGTGACTGCTAA 1583
> AT5G10930.1 | Symbols: CIPK5, SnRK3.24 | CBL-interacting protein
kinase 5 | chr5:3445366-3447114 REVERSE LENGTH=1749
Length=1749
Score = 992 bits (537), Expect = 0.0
Identities = 1075/1325 (81%), Gaps = 75/1325 (6%)
Strand=Plus/Plus
Query 97 CGAGTTCTGTTCGGAAAATACGAGATGGGAAGGTTACTAGGCAAAGGAACATTCGCAAAA 156
||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| |||
Sbjct 224 CGAGTTCTGTTCGGAAAGTACGAGATGGGAAGGTTATTAGGCAAAGGAACCTTCGCCAAA 283
Query 157 GTCTATTACGGCAAAGAGATAACAAC--CGGAGAAAGCGTTGCAATCAAAATCATCAACA 214
|||||||||||||||||||| || | ||| || |||| ||||||||| |||||||||
Sbjct 284 GTCTATTACGGCAAAGAGAT--CATCGGCGGCGAGTGCGTCGCAATCAAAGTCATCAACA 341
Query 215 AAGATCAAGTCATCAAACGTGA--AGGTATGATGGAACAAATCAAACGAGAGATCTCAAT 272
| |||||||| || || | || || |||||||||||||||||||| ||||| |||||
Sbjct 342 AGGATCAAGTAAT-GAA-GAGACCTGGAATGATGGAACAAATCAAACGCGAGATTTCAAT 399
Query 273 CATG-AGACTTGTTCGTCATCCAAACATCGTCGAATTAAAAGAAGTCATGGCAACAAAAA 331
|||| || || ||||||||||| ||||| || ||||| |||||||||||||| || || |
Sbjct 400 CATGAAG-CTCGTTCGTCATCCCAACATAGTTGAATTGAAAGAAGTCATGGCTACGAAGA 458
Query 332 CAAAGATCTTCTTCATCATGGAATACGTTAAAGGCGGTGAACTTTTCTCCAAGATCGT-T 390
| |||||||||||| ||||||| | |||||||||||| || ||||||| ||| ||| | |
Sbjct 459 CCAAGATCTTCTTCGTCATGGAGTTCGTTAAAGGCGGCGAGCTTTTCTGCAAAATC-TCT 517
Query 391 AAAGGAAAGCTTA-AAGAAGACTCTGCTCGTAAG-TACTTCCAACAATTAATCTCAGCCG 448
||||| ||| ||| | |||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct 518 AAAGGTAAG-TTACACGAAGACGCTGCTCGT-AGATATTTCCAGCAATTGATCTCAGCCG 575
Query 449 TTGATTTTTGTCATAGTAGAGGCGTGTCTCACCGAGATCTAAAACCGGAGAATC-TCTTG 507
|||||| ||| |||||||||||||| ||||| || ||||| ||||| ||||||| ||||
Sbjct 576 TTGATTATTGCCATAGTAGAGGCGTTTCTCATCGCGATCTGAAACCTGAGAATCTTCTT- 634
Query 508 GTCGACGAGAACGGTGATCTT-AAGGTGTCCGATTTCGG-TCTCTCTGCTTTACCTGAAC 565
| || ||||| || ||| || || | ||||||||||| | | ||||| ||||| ||||
Sbjct 635 TTAGATGAGAATGGAGAT-TTGAAAATCTCCGATTTCGGAT-TATCTGCGTTACCGGAAC 692
Query 566 AGATT-TTACAAGACGGTTTGCTTCATACTCAGTGTGGAACTCCGGCGTATGTTGCGCCG 624
||||| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 693 AGATTCTT-CAAGACGGATTGCTTCATACGCAGTGTGGAACTCCGGCGTATGTTGCGCCG 751
Query 625 GAGGTTTTGAGGAAGAAAGGTTACGACGGAGCTAAAGCTGATATTTGGTCGTGTGGTGT- 683
||||| || | ||||||||| |||||||| || ||||||||||| |||||||| || ||
Sbjct 752 GAGGTATTAAAGAAGAAAGGATACGACGGCGCGAAAGCTGATATCTGGTCGTGCGGCGTC 811
Query 684 GATCTTGTACGTACTTCTCGCCGGTTTTTTACCGTTTCAAGATGAGAACCTAATGAAAAT 743
| | ||||| || ||||||||||| | ||| ||||||||||||||||| || ||||| ||
Sbjct 812 GTT-TTGTATGTTCTTCTCGCCGGATGTTTGCCGTTTCAAGATGAGAATCTGATGAATAT 870
Query 744 GTATCGGAAGATCTTCAAATCGGAGTTTGAGTTTCCGCCGTGGTTTTCACCGGA-GTCCA 802
|||||||||||| |||| | |||| ||||| ||||||||||||||||| ||||| | | |
Sbjct 871 GTATCGGAAGATTTTCAGAGCGGATTTTGAATTTCCGCCGTGGTTTTCTCCGGAAG-CGA 929
Query 803 AGAGATTGATTTCGAAGCTTTTAGTTGTTGATCCTA-ATAAACGGATCTCGATACCAGCG 861
||| ||||||||||| || | ||||| ||||| | || |||||||||||| || |||
Sbjct 930 GGAGGTTGATTTCGAAACTCCTCGTTGTAGATCC-AGATCGACGGATCTCGATTCCGGCG 988
Query 862 ATTATGAGAACACCGTGGTTTCGTAAAAACTTCAACTCT-CCGATCGCTTTCAAGATCGA 920
||||||||||| || ||| | || |||||||||| ||| ||| | |||||||| |||||
Sbjct 989 ATTATGAGAACGCCTTGGCTCCGGAAAAACTTCA-CTCCGCCGTTAGCTTTCAAAATCGA 1047
Query 921 TGA---G-------CTC---G-AG-AACCAGAACGTAGAAGACGAA-AC-ACC-A-AC-- 959
|| | ||| | || || | |||| |||||| ||| | || | |
Sbjct 1048 CGAACCGATTTGTTCTCAAAGCAGCAAAAACAACGAAGAAGAAGAAGAAGACGGAGATTG 1107
Query 960 --AACAA-CAA-CA---CCGGTCTCGCCGAAGTTCTTTAACGCGTTT-GAATTCATCTCC 1011
|| || ||| || ||| | |||||||| ||||| ||||| ||| |||||||| |||
Sbjct 1108 TGAA-AATCAAACAGAGCCGATATCGCCGAAATTCTTCAACGC-TTTCGAATTCATATCC 1165
Query 1012 TCGATGTCATCAGGATTCGATTTGTCGAGTTTGTTCGAGAACAAAAGGAA-GCTG-AGCT 1069
|||||||| || ||||| || || ||||| |||||||||| ||| ||||| | || | |
Sbjct 1166 TCGATGTCTTCCGGATTTGACTTATCGAGCTTGTTCGAGAGCAAGAGGAAAG-TGCAA-T 1223
Query 1070 CTATGTTTACGTCACGGTGGTCGGCGTCGGAGATAATGGCGAAGCTTGAAA-GGATAGGG 1128
| ||||||||||||||| ||||||| ||||| |||||| |||| | |||| || || |
Sbjct 1224 CGGTGTTTACGTCACGGTCGTCGGCGACGGAGGTAATGGAGAAGATAGAAACGGTTACG- 1282
Query 1129 AAAGAGATGAACATGAAGGTTAAGAGGACTAAGGATTTTAAAGTGAAGATGTTGGGGACA 1188
|| |||||||||||||| || ||||| || ||||||||||||||||||||| |||| |
Sbjct 1283 AAGGAGATGAACATGAAAGTGAAGAGAACGAAGGATTTTAAAGTGAAGATGGAAGGGAAA 1342
Query 1189 ACGGAAGGGAGGAAAGGACAGATCG-CGGTGACGGCGGAGGT-TTTCGAGGTTGCGCCGC 1246
||||||||||| ||||||| | | | || |||||||||| || ||| || || ||||||
Sbjct 1343 ACGGAAGGGAGAAAAGGACGGTT-GTCGATGACGGCGGAAGTGTTT-GAAGTAGCGCCGG 1400
Query 1247 AGGT-TGCCGTCGTTGAGTTATGTAAATCGGCGGGAGATACTTTGGAGTATAATCGGTTA 1305
|| | | | || || ||||| || |||||||||||||||||||||||||| || |||||
Sbjct 1401 AGATAT-CGGTGGTGGAGTTTTGCAAATCGGCGGGAGATACTTTGGAGTACGATAGGTTA 1459
Query 1306 TAAGAAGAACAAGTCCGGCCGGCGTTGGAGGAGATAGTTTGGTCGTGGCACGGTGATAAT 1365
|| |||||| |||| ||||||||||| | || || || ||||| |||||||||||||||
Sbjct 1460 TACGAAGAAGAAGTACGGCCGGCGTTAAACGACATCGTCTGGTCATGGCACGGTGATAAT 1519
Query 1366 CATAA 1370
||||
Sbjct 1520 AATAA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71134172265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5