BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894427
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25260.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 2156 0.0
AT5G25250.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1735 0.0
> AT5G25260.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:8752684-8754485 FORWARD
LENGTH=1662
Length=1662
Score = 2156 bits (1167), Expect = 0.0
Identities = 1324/1400 (95%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 1 ATGTTCAAGGTTGCAAGAGCATCACAATATTTGGCCATCACCGGTGGTGGGATCGAAGAT 60
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 68 ATGTTCAAGGTTGCAAGAGCATCACAGTACTTAGCCATCACCGGTGGTGGGATCGAAGAT 127
Query 61 ATCAAGCTCTCGAAGAAATCATGGGTGCTTCCATGGCAAAAATGCACCGTTTTCGACGTG 120
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 128 ATCAAGCTCTCGAAGAAATCATGGGTGTTTCCATGGCAAAGGTGCACCGTTTTCGACGTA 187
Query 121 TCTCCAGTGAACTACACTTTCAAAGTCCAGGCTATGAGTGCAGAGAAGCTACCTTTTGTT 180
||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||
Sbjct 188 TCTCCCGTGAACTACACTTTCAAAGTCCAAGCCATGAGTGCAGAGAAGCTCCCTTTCGTT 247
Query 181 CTTCCTGCTGTCTTCACTATCGGCCCTCGTGTTGATGACACTGAAGCACTTATTCTGTAC 240
|| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 248 CTCCCTGCTGTCTTCACTATCGGCCCTCGTGTCGATGACACTGAAGCGCTGATTCTGTAC 307
Query 241 GCTAGGCTGATTTCGCCTCACGACAAACAGTCAAATCATGTCAATGAGCTTGTTGAAGGT 300
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 308 GCTAGGCTTATTTCGCCTCATGACAAACAGTCAAATCATGTGAATGAGCTTGTTGAAGGT 367
Query 301 GTTATTGAGGGAGAGACTCGTGTTCTCGCTGCTTCCATGACCATGGAAGAGATCTTCAAA 360
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 368 GTTATCGAGGGAGAGACTCGTGTTCTCGCTGCTTCCATGACCATGGAAGAGATCTTTAAA 427
Query 361 GGGAC-AAAGGAGTTTAAGAAGGAGGTGTTTGATAAGGTTCAACTAGAATTGGACCAGTT 419
||||| ||| |||||||||||||| |||||||||||||||||| ||||||| ||||||||
Sbjct 428 GGGACGAAA-GAGTTTAAGAAGGAAGTGTTTGATAAGGTTCAATTAGAATTAGACCAGTT 486
Query 420 TGGACTCGTAATCTACAATGCCAACGTCAAACAGCTGGTTGACGTGCCCGGACATGAGTA 479
||| ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||
Sbjct 487 TGGTCTCGTAATCTACAATGCAAACGTGAAACAGCTCGTTGACGTGCCTGGACATGAGTA 546
Query 480 CTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCGGCCAATCAGGCCAGGATCGATGT 539
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 547 CTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCAGCAAATCAGGCCAGGATCGATGT 606
Query 540 GGCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACAGGGCTTACGTTACA 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 607 GGCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACTGGGCTTACGCTACA 666
Query 600 GAACGCAGCGAAAATTGACGCGGAGTCAAAGATCATATCGATGCAGAGGCAAGGAGAAGG 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAACGCTGCGAAAATTGACGCGGAGTCAAAGATCATATCGATGCAGAGGCAAGGAGAAGG 726
Query 660 GACAAAGGCGGAGATCAAAGTGAAGACTGAGGTAAAAGTGTTTGAGAATCAGAAGGAAGC 719
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 727 GACGAAGGCGGAGATCAAAGTGAAGACTGAGGTTAAAGTGTTTGAGAATCAGAAGGAAGC 786
Query 720 TGATGTAGCTAAGGCCAACTCGGAGCTTGCCATGAAAAAAGCTGCTTGGACCAAGGATGC 779
||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 787 TGATGTAGCTAAGGCCAACTCCGAGCTAGCTATGAAGAAAGCTGCTTGGACCAAGGATGC 846
Query 780 TAAGGTTGCTGAGGTTGAAGCAACCAAGGCTGTGGCTTTGAGAGAAGCTGAGCTTCAGAC 839
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 847 TAAGGTTGCTGAGGTTGAAGCAACCAAGGCCGTGGCTTTGAGAGAAGCTGAGCTTCAGAC 906
Query 840 TCAAGTTGAAAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAGGCCGAGTTCCTTAG 899
||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 907 TCAGGTCGAGAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAAGCCGAGTTCCTTAG 966
Query 900 CAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAATTGTACAATAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 967 CAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAATTGTACAACAA 1026
Query 960 GCAGAAGCAAGCAGAGGCGGTTTTATACGAGAAGCAAAAGCAAGCTGAGGCACAGAAAGC 1019
|||||||||||| ||||| ||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 1027 GCAGAAGCAAGCGGAGGCAGTTCTATATGAGAAGCAAAAGCAAGCCGAGGCACAGAAAGC 1086
Query 1020 TGAAGCAGACGCAACGTTCTACTCAAAGCA-AAGAGAAGCAGAGGGACTTGTTGCTCTAG 1078
|||||||||||| ||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 1087 TGAAGCAGACGCTACGTTCTACTCAAAGCAGAA-AGAAGCAGAGGGACTTGTTGCTTTAG 1145
Query 1079 CCAGTGCTCAAGGAACATATCTCAGAACCCTCCTAGACGCAGTTCAGAATGACTATTCTT 1138
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1146 CCAGTGCTCAAGGAACTTATCTCAGAACCCTCCTAGACGCTGTTCAGAATGACTATTCTT 1205
Query 1139 GCCTTAGAGACTTCTTGATGATTAACAATGGCACTTATCAGGAGATCGCTAAGACTAACG 1198
| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1206 GTCTTAGAGACTTTTTGATGATTAACAATGGCACTTATCAGGAGATTGCTAAGACTAACG 1265
Query 1199 CACTTGCGGTCAGAGACTTGCAGCCCAAGATTAGCGTTTGGAACCACGGTGGAGAACAGG 1258
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1266 CGCTTGCGGTCAGAGACTTGCAGCCCAAGATTAGCGTTTGGAACCATGGTGGAGAACAGG 1325
Query 1259 GGATTGGTGGTGCTGGTGGGAGTGGGAATGCTATGAAGGATATAGCTGGACTTTACAAGA 1318
|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 1326 GGATTGGTGGTGCTAGTGGGAGTGG---T---ATGAAGGATATAGCTGGACTTTACAAGA 1379
Query 1319 TGCTGCCTCCAGTTCTTGATACGGTTTACCAGCAGACTGGGATGCAGCCACCGGCTTGGA 1378
|||||||||| ||||| ||||| |||||| ||||||||||||||||||| ||||||||||
Sbjct 1380 TGCTGCCTCCGGTTCTCGATACAGTTTACGAGCAGACTGGGATGCAGCCGCCGGCTTGGA 1439
Query 1379 TCGGTACTCTAAGCAAGTGA 1398
||||||||||||||||||||
Sbjct 1440 TCGGTACTCTAAGCAAGTGA 1459
> AT5G25250.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:8749727-8751636 FORWARD
LENGTH=1666
Length=1666
Score = 1735 bits (939), Expect = 0.0
Identities = 1248/1396 (89%), Gaps = 26/1396 (2%)
Strand=Plus/Plus
Query 1 ATGTTCAAGGTTGCAAGAGCATCACAATATTTGGCCATCACCGGTGGTGGGATCGAAGAT 60
|||||||| ||||||||||| ||||| |||||||| |||||||||| ||| ||||||||
Sbjct 48 ATGTTCAAAGTTGCAAGAGCGTCACAGTATTTGGCGATCACCGGTGCTGGTATCGAAGAC 107
Query 61 ATCAAGCTCTCGAAGAAATCATGGGTGCTTCCATGGCAAAAATGCACCGTTTTCGACGTG 120
|||||||| || ||||| ||||||||| ||||||||||| |||||||| ||||||||
Sbjct 108 ATCAAGCTTTCCAAGAAGTCATGGGTGTTTCCATGGCAATCTTGCACCGTCTTCGACGTT 167
Query 121 TCTCCAGTGAACTACACTTTCAAAGTCCAGGCTATGAGTGCAGAGAAGCTACCTTTTGTT 180
||||| |||||||| |||||||||||||| || ||||| ||||||||||| |||||||||
Sbjct 168 TCTCCGGTGAACTATACTTTCAAAGTCCAAGCCATGAGCGCAGAGAAGCTTCCTTTTGTT 227
Query 181 CTTCCTGCTGTCTTCACTATCGGCCCTCGTGTTGATGAC-ACTGAAGCACTTATTCTGTA 239
||||| ||||| || || || || ||||| ||||||||| | ||| || || ||| ||||
Sbjct 228 CTTCCCGCTGTTTTTACGATTGGTCCTCGCGTTGATGACGA-TGACGCGCTGATTTTGTA 286
Query 240 CGCTAGGCTGATTTCGCCTCACGACAAACAGTCAAATCATGTCAATGAGCTTGTTGAAGG 299
|||||| ||||||| ||||| || ||| | |||||||||||| ||||||||||||||||
Sbjct 287 TGCTAGGTTGATTTCTCCTCATGATAAAGATTCAAATCATGTCCATGAGCTTGTTGAAGG 346
Query 300 TGTTATTGAGGGAGAGACTCGTGTTCTCGCTGCTTCCATGACCATGGAAGAGATCTTCAA 359
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 347 TGTTATTGAAGGAGAGACTCGTGTTCTTGCTGCTTCCATGACTATGGAAGAGATCTTTAA 406
Query 360 AGGGACAAAGGAGTTTAAGAAGGAGGTGTTTGATAAGGTTCAACTAGAATTGGACCAGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 407 AGGGACAAAGGAGTTTAAGAAGGAGGTGTTTGATAAGGTTCAACTAGAATTAAACCAGTT 466
Query 420 TGGACTCGTAATCTACAATGCCAACGTCAAACAGCTGGTTGACGTGCCCGGACATGAGTA 479
||| || || || ||||||||||| || || ||||| ||||| ||||| |||||||| ||
Sbjct 467 TGGTCTTGTGATATACAATGCCAATGTGAAGCAGCTCGTTGATGTGCCTGGACATGAATA 526
Query 480 CTTCTCTTACTTGGGTCAGAAAACCCAAATGGAAGCGGCCAATCAGGCCAGGATCGATGT 539
||||||||||||||||||||| || ||||||||||| || |||||||| |||||||||||
Sbjct 527 CTTCTCTTACTTGGGTCAGAAGACTCAAATGGAAGCAGCAAATCAGGCTAGGATCGATGT 586
Query 540 GGCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACAGGGCTTACGT-TAC 598
||||||||||||||||||||||||||||||||||||||||||| || ||||| | | |
Sbjct 587 CTCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGACTGGTCTTAC-TCTCC 645
Query 599 AGAACGCAGCGAAAATTGACGCGGAGTCAAAGATCATATCGATGCAGAGGCAAGGAGAAG 658
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 646 AGAACGCAGCCAAAATTGACGCTGAGTCAAAGATCATATCGATGCAGAGGCAAGGAGAAG 705
Query 659 GGACAAAGGCGGAGATCAAAGTGAAGACTGAGGTAAAAGTGTTTGAGAATCAGAAGGAAG 718
| ||||| | || |||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 706 GAACAAAAGAAGAAATCAAAGTGAGGACTGAGGTTAAAGTGTTTGAGAATCAGAAGGAGG 765
Query 719 CTGATGTAGCTAAGGCCAACT-CGGAGCTTGCCATGAAAAAAGCTGCTTGGACCAAGGAT 777
||||||||||||||||||| | | |||||||| |||||||||||||||||||| ||||||
Sbjct 766 CTGATGTAGCTAAGGCCAA-TGCCGAGCTTGCGATGAAAAAAGCTGCTTGGACTAAGGAT 824
Query 778 GCTAAGGTTGCTGAGGTTGAAGCAACCAAGGCTGTGGCTTTGAGAGAAGCTGAGCTTCAG 837
||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 825 GCTCAGGTGGCTGAGGTTGAAGCAACCAAGGCCGTGGCTTTGAGAGAAGCTGAGCTTCAG 884
Query 838 ACTCAAGTTGAAAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAGGCCGAGTTCCTT 897
||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 885 ACTCAGGTCGAGAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAGGCTGAGTTCCTT 944
Query 898 AGCAAAGCCAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAATTGTACAAT 957
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 945 AGCAAAGCTAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAACTATACAAC 1004
Query 958 AAGCAGAAGCAAGCAGAGGCGGTTTTATACGAGAAGCAAAAGCAAGCTGAGGCACAGAAA 1017
|||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1005 AAGCAGAAACAAGCAGAGGCGGTTCTATACGAGAAACAAAAGCAAGCCGAGGCACAGAAA 1064
Query 1018 GCTG-AAGCAGACGCAACGTTCTACTCAAAGCA-AAGAGAAGCAGAGGGACTTGTTGCTC 1075
|| | |||| || || | |||||||||||||| || ||||||||||||||||||||| |
Sbjct 1065 GC-GCAAGCGGATGCGGCTTTCTACTCAAAGCAGAA-AGAAGCAGAGGGACTTGTTGC-C 1121
Query 1076 T-AGCCAGTGCTCAAGGAACATATCTCAGAACCCTCCTAGACGCAGTTCAGAATGACTAT 1134
| ||| ||||| ||||| || ||||| ||||||||| ||||||| |||||||||||||||
Sbjct 1122 TTAGCTAGTGCGCAAGGGACTTATCTAAGAACCCTCTTAGACGCTGTTCAGAATGACTAT 1181
Query 1135 TCTTGCCTTAGAGACTTCTTGATGATTAACAATGGCACTTATCAGGAGATCGCTAAGACT 1194
||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||||
Sbjct 1182 TCTTGTCTTAGAGACTTCTTGATGATTAACAATGGTATTTATCAAGAGATCGCTAAGACT 1241
Query 1195 AACGC-ACTTGCGGTCAGAGACTTGCAGCCCAAGATTAGCGTTTGGAACCACGGTGGAGA 1253
|| || | | ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1242 AATGCGA-TGGCGGTTAGAGACTTGCAGCCCAAGATTAGTGTTTGGAACCATGGTGGAGA 1300
Query 1254 ACAGGGGATTGGTGGTGCTGGTGGGAGTGGGAATGCTATGAAGGATATAGCTGGACTTTA 1313
|||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1301 ACAGGG--T-GGTGGT---------AGTGGGAATGCTATGAAGGATATAGCTGGACTTTA 1348
Query 1314 CAAGATGCTGCCTCCAGTTCTTGATACGGTTTACCAGCAGACTGGGATGCAGCCACCGGC 1373
||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1349 CAAGATGTTGCCTCCGGTTCTTGATACGGTTTATGAGCAGACTGGGATGCAGCCACCTGC 1408
Query 1374 TTGGATCGGTACTCTA 1389
||||||||||||||||
Sbjct 1409 TTGGATCGGTACTCTA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5