BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894438

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25310.1 | Symbols:  | Exostosin family protein | chr5:87848...   619    6e-177


> AT5G25310.1 | Symbols:  | Exostosin family protein | chr5:8784820-8787366 
FORWARD LENGTH=1574
Length=1574

 Score =  619 bits (335),  Expect = 6e-177
 Identities = 397/426 (93%), Gaps = 8/426 (2%)
 Strand=Plus/Plus

Query  1    ATGGATAAGTTTCAA-CACAGATTCACGAGATTCGGATTTATCTCGATTTGTCTCGGATC  59
            ||||||||||||||| | || |||||||||||||||||| |||||||||||| |||||||
Sbjct  1    ATGGATAAGTTTCAATC-CAAATTCACGAGATTCGGATTCATCTCGATTTGTTTCGGATC  59

Query  60   GATCGCACTTGTATTATTGATCTCTCGTTGTTCAATTTCTTTCTTCGATTACTCTCTTGA  119
            |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| || |
Sbjct  60   GATCGCACTTGTATTATTGATCTCTCATTGTTCAACTTCTTTCTTTGATTACTCTTTTCA  119

Query  120  GAAATTTGAATTCTCGTTCCC---AGAATCTGAGCTTCGAAGAAACGTTT--ACT-CTAG  173
            ||||||  |||||||||||||   |||| |||||||||||||||||||||  |||  |||
Sbjct  120  GAAATTCAAATTCTCGTTCCCAGAAGAAACTGAGCTTCGAAGAAACGTTTACACTAGTAG  179

Query  174  TTCCGGTGAAGAAAACAGAGTCGTCGTTGATTCTCATCATGTTTCTCAACAGATCCTCAC  233
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  180  TTCCGGTGAAGAAAACAGAGTCGTCGTTGATTCTCGTCATGTTTCTCAACAGATCCTCAC  239

Query  234  ACTCCGATCTACTAATTCCACTTTACAGAGTAAACCGGAAAAACTAAACCGGAGAAATTT  293
              ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TGTCCGATCTACTAACTCCACTTTACAGAGTAAACCGGAAAAACTAAACCGGAGAAATTT  299

Query  294  GGTGGAACAAGGATTAGCGAAAGCAAGAGCTTCGATTCTAGAAGCCTCTTCGAATGTTAA  353
            |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct  300  GGTGGAACAAGGATTAGCGAAAGCAAGAGCATCGATTTTAGAAGCTTCTTCGAATGTTAA  359

Query  354  CACTACATTGTTCAAATCTGATCTTCCAAACCCAGAAATTTATCGTAATCCATCATCTTT  413
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  360  CACTACATTGTTCAAATCTGATCTTCCAAACTCAGAAATTTATCGTAATCCATCAGCTTT  419

Query  414  ATATCG  419
            ||||||
Sbjct  420  ATATCG  425



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5