BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894442
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25340.1 | Symbols: | Ubiquitin-like superfamily protein | ... 953 0.0
> AT5G25340.1 | Symbols: | Ubiquitin-like superfamily protein
| chr5:8793018-8794784 FORWARD LENGTH=1326
Length=1326
Score = 953 bits (516), Expect = 0.0
Identities = 591/628 (94%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAGCTTTCATCGCCGGACATTTTCTTATGATAAACTTCCGACCGAACCCATTAGG 60
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 221 ATGGGAAGCTTTCATCGCCGGACTTTTTCTTATGATAAACTTCCGAACGAACCCATTAGG 280
Query 61 CTCTCTGTTCTCAAACTGGATGGCTCTTCCTTTGATGTTTACGTATTGACCTCGGCCACC 120
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 CTCTCCGTTCTCAAACTAGATGGCTCTTCCTTTGATGTTTACGTATTGACCTCGGCCACC 340
Query 121 GTTGGGGATCTTAAGGTTGCCATAGAGACTGCCTTTAGCCACATCCCCAAGAAGGGACCC 180
||||||||||| |||||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct 341 GTTGGGGATCTCAAGGTTGCTATAGAAACTGCCTTCAGCCATGTCCCCAAGAAGGGACCC 400
Query 181 TCCAAGATATCATGGTCACACGTGTGGGGGCATTTTTGTTTGTGTTTCGGAGGTCAGAAG 240
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 401 TCCAAGATCTCATGGTCACACGTATGGGGGCATTTTTGTTTGTGTTTCGGAGGTCAGAAG 460
Query 241 TTAATTACCGATACGGATTGCATCGGAAGTTATGGGCTGAAGGACGGTGATGAGGTAAGA 300
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 461 TTAATTACCGATACGGATTGCATCGGAAATTATGGGATGAAGGACGGTGATGAGGTTAGG 520
Query 301 TTCAAAAACCATGTGTCAGGCAATGCGGTATTGAGCAAGGGATATTCTAGGAAATCCAAA 360
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TTCAAAAACCATGTATCCGGCAATGCGGTATTGAGCAAGGGATATTCTAGGAAATCCAAA 580
Query 361 CAAAAGAATTTAGAGAGGGTATTGCCAAAGGATGTAGATGAAGTAATGAATAGAATTGAA 420
|||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||
Sbjct 581 CAAAAGAATTTAGAGAGGGTATTGCCAAAGGATGGAGATGAAGTATTGAATAGGATTGAA 640
Query 421 GAGATTGATGACACTTGGGATGATCTCGAGAAAGGAGGCTTCGTTAGGTACAAAGATGAT 480
|||||||||||| ||||||||||||| |||| |||||| || || | |||||||||||||
Sbjct 641 GAGATTGATGACTCTTGGGATGATCTTGAGAGAGGAGGTTTAGTGATGTACAAAGATGAT 700
Query 481 GACATAGAAACTTCTTCAAATGAAAGCAGTAGGTCTTGTCTATCCAGTGTACGA-GGTTG 539
||||| |||||||||||||||||||||| |||||||||||||||| ||||| | |||||
Sbjct 701 GACATGGAAACTTCTTCAAATGAAAGCAACAGGTCTTGTCTATCCACTGTAC-ATGGTTG 759
Query 540 CTGCTTTGCTTTGGGTTTAAAGGAGCTTCTTGGGTTTGGTAATGACAGAGCTTATTACTC 599
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 760 CTGCTTTGCTTTCGGTTTAAAAGAGCTTCTTGGGTTTGGTAATGACAGAGCTTATTACTC 819
Query 600 TTTAAGAGATACTTGGAGAGACGATTGA 627
||| ||||||||||||||||||||||||
Sbjct 820 TTTGAGAGATACTTGGAGAGACGATTGA 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5