BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894454
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT1G65550.1 | Symbols: | Xanthine/uracil permease family prote... 2488 0.0
AT5G25420.1 | Symbols: | Xanthine/uracil/vitamin C permease | ... 856 0.0
> AT1G65550.1 | Symbols: | Xanthine/uracil permease family protein
| chr1:24367694-24370800 REVERSE LENGTH=1626
Length=1626
Score = 2488 bits (1347), Expect = 0.0
Identities = 1531/1622 (94%), Gaps = 4/1622 (0%)
Strand=Plus/Plus
Query 25 AACGGTGGTGGCGGAAACAACGGAGCAGCAAACCGGACGGAGGAGTTACAACCCCACCCG 84
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 7 AACGGTGGTGGCGGAAACAACGGAGCAGCAAACCGGACGGAAGAGTTACAACCCCACCCG 66
Query 85 GTGAAAGAACAACTCCCCGGAATCCAATACTGCGTCAACAGTCCTCCTCCTTGGTTTGAA 144
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 67 GTGAAAGAACAACTCCCCGGAATCCAGTACTGCGTCAACAGTCCTCCTCCTTGGCTTGAA 126
Query 145 GCCGTAGTGTTGGGTTTCCAGCATTATTTGTTGAGTCTTGGCATCACAGTTCTCATTCCA 204
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 127 GCCGTAGTGTTGGGTTTCCAGCATTACTTGTTGAGTCTTGGCATCACAGTTCTGATTCCA 186
Query 205 AGTCTATTAGTTCCACTCATGGGAGGTGG-TGATGCAGAAAAAGTTAAAGTAATACAAAC 263
||| ||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||
Sbjct 187 AGTGTATTAGTTCCACTCATGGGAGGTGGCT-ATGCAGAAAAGGTTAAAGTCATACAAAC 245
Query 264 ATTACTATTTGTGTCTGGATTAACAACATTGTTCCAGTCTTTCTTTGGAACTCGATTGCC 323
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 246 ATTACTGTTTGTGTCTGGATTAACAACATTGTTCCAGTCATTCTTTGGAACTCGATTGCC 305
Query 324 TGTGATAGCTGCGGCTTCTTATGCCTATATCATACCTATCACTTCCATCATTTATTCGAC 383
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TGTGATAGCTGTAGCTTCTTATGCCTATATCATACCTATCACTTCCATCATTTATTCGAC 365
Query 384 CCGATTCACTTACTACACTGATCCTTTTGAAAGGTTTGTGAGAACAATGAGAAGCATACA 443
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 366 CCGATTCACTTACTACACTGATCCTTTTGAAAGGTTTGTGCGAACAATGAGAAGCATACA 425
Query 444 AGGAGCTTTGATTATAACCGGATGTTTCCAAGTTCTTGTATGTTTTCTAGGCGTATGGAG 503
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct 426 AGGAGCTTTGATTATAACCGGATGTTTCCAAGTTCTTATCTGTATTCTAGGCGTATGGAG 485
Query 504 AAATATTGTTAGATTTCTAAGCCCACTCTCCATTGCTCCTTTGGCAACATTTACCGGATT 563
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 486 AAATATTGTTAGATTTCTAAGTCCACTCTCCATTGCTCCTTTGGCAACATTTACCGGATT 545
Query 564 GGGACTCTACCACATTGGCTTCCCTTTGTTAGCAAGATGCGTTGAAGTAGGACTTCCTGG 623
||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 546 GGGACTCTACCACATCGGTTTCCCTTTGCTAGCAAGATGCGTTGAAGTGGGACTTCCCGG 605
Query 624 GTTGATCTTACTTGTTTTTGTCACTCAGTACTTACCGCGTTTTTTGAAGATGAAAAAAGG 683
|||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 606 ATTGATCCTACTTATTTTTGTCACTCAGTACTTACCGCGTTTTCTGAAGATGAAAAAAGG 665
Query 684 GGCGATGATTTGGGATGGAAACAGATGCGACCGCTATGGGATGATGTTATGCATTCCAGT 743
| |||||||| |||||||| |||||| ||||| ||||||||||| |||||||||||| |
Sbjct 666 AGTGATGATTTTGGATGGAAGCAGATGTGACCGTTATGGGATGATTTTATGCATTCCATT 725
Query 744 GGTATGGTTGTTCGCTCAGCTACTCACATCGAGTGGTGTTTATGACCACAAGTCTCAGAC 803
|||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| ||
Sbjct 726 GGTATGGTTGTTTGCTCAACTTCTCACATCCAGTGGTGTTTATGACCACAAGTCTCATAC 785
Query 804 TACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTCATCACCAACACTCCTTGGATATA 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTCATCACCAACACTCCTTGGATATA 845
Query 864 CATACCATATCCTTTTCAATGGGGAAGCCCAACTTTCGACATCACTGATTCCTTTGCGAT 923
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 846 CATACCATATCCTTTCCAATGGGGAAGTCCAACTTTCGACATCACTGATTCTTTTGCGAT 905
Query 924 GATGGCTGCGTCTTTCGTCACTCTCTTCGAGTCGACTGGTTTGTTCTATGCATCAGCAAG 983
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 906 GATGGCTGCGTCTTTCGTCACTCTATTTGAGTCGACTGGTTTGTTCTATGCATCCGCAAG 965
Query 984 ATATGGAAGTGCGACGCCGATTCCACCATCGGTTGTTAGTCGTGGTAATGGCTGGCTGGG 1043
||||||||| |||||||| ||||||||||| |||||||||||||||| | | ||||||||
Sbjct 966 ATATGGAAGCGCGACGCCAATTCCACCATCAGTTGTTAGTCGTGGTACTTGTTGGCTGGG 1025
Query 1044 AGTTGGCGTATTACTCAATGGCATGCTTGGAGGCATCACGGGGATCACAACATCAACAGA 1103
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1026 AGTTGGAGTATTACTCAATGGCATGCTTGGAGGCATCACAGGGATCACAACATCAACAGA 1085
Query 1104 AAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTAGAAGAGTGATACAAATATCAGC 1163
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1086 AAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTCGAAGAGTGATACAAATATCAGC 1145
Query 1164 TGCCTTCATGCtttttttCTCTATTTTTGGAAAGTTTGGAGCGTTTTTCGCGTCAATACC 1223
||| |||||| |||||||||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 1146 TGCATTCATGATTTTTTTCTCCATTTTTGGAAAATTTGGAGCGTTTTTTGCGTCCATACC 1205
Query 1224 ATTACCAATCATGGCATCTCTTTATTGCATCGTATTGTGTTTTGTATCTTCCGCGGGACT 1283
||||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||
Sbjct 1206 ATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCTGTGGGACT 1265
Query 1284 TAGTTTTCTACAATTCTGCAACCTCAATAGCTTCAACACCAAATTCATTGTAGGATTTTC 1343
||| | |||||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct 1266 TAGCTATCTACAATTCTGCAACCTCAATAGCTTCAACATCAAATTCATTCTCGGATTTTC 1325
Query 1344 TTTTTTCATGGCTATTTCAATCCCTCAATATTTCAGAGAATATTACAATGGAGGTTGGCG 1403
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 1326 CTTTTTCATGGCTATTTCAATCCCACAATACTTCAGAGAATACTACAATGGAGGGTGGCG 1385
Query 1404 GTCTGATCATCGCTCGAATTGGTTGGAAGATGTGATAAGAGTGATATTCATGTCCCACAC 1463
||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 1386 GTCTGATCATCACTCAAATTGGTTGGAAGATATGATAAGAGTGATATTCATGTCACATAC 1445
Query 1464 AACGGTTGCGGCAATAATAGCGATAGTGCTTGATTGCACATTGTGTCGTGAAAACGATGA 1523
|||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1446 AACGGTTGCGGCAATAATTGCGATAGTGCTTGATTGCACATTGTGTCGTGACAGCGATGA 1505
Query 1524 AGCCAAGAAAGATTGCGGACTGAAATGGTGGGATAAATTTCGACTATT-CAATCTTGACG 1582
||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||
Sbjct 1506 AGCCAAGAAAGATTGCGGAATGAAATGGTGGGATAAGTTTCGACT-TTACAATCTTGACG 1564
Query 1583 TGCGAAACGATGAGTTTTATGGTCTACCTTGCAACCTCAACAAATTCTTCCCTTCTCATT 1642
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1565 TGCGAAACGATGAGTTTTACGGTCTACCTTGCCGCCTCAACAAATTCTTCCCTTCTCATT 1624
Query 1643 GA 1644
||
Sbjct 1625 GA 1626
> AT5G25420.1 | Symbols: | Xanthine/uracil/vitamin C permease
| chr5:8838417-8841775 REVERSE LENGTH=1260
Length=1260
Score = 856 bits (463), Expect = 0.0
Identities = 543/583 (93%), Gaps = 0/583 (0%)
Strand=Plus/Plus
Query 9 TGGTGGTGGTGGCGGCAACGGTGGTGGCGGAAACAACGGAGCAGCAAACCGGACGGAGGA 68
|||||| | ||| ||||| |||||||| |||||||||||||||| ||||||| |||||||
Sbjct 27 TGGTGGAGCTGGTGGCAATGGTGGTGGTGGAAACAACGGAGCAGGAAACCGGGCGGAGGA 86
Query 69 GTTACAACCCCACCCGGTGAAAGAACAACTCCCCGGAATCCAATACTGCGTCAACAGTCC 128
||||||||||||||| ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct 87 GTTACAACCCCACCCAGTGAAAGAACAACTCCCTGGAATTCAATATTGTGTCAACAGTCC 146
Query 129 TCCTCCTTGGTTTGAAGCCGTAGTGTTGGGTTTCCAGCATTATTTGTTGAGTCTTGGCAT 188
|||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 147 TCCTCCTTGGCTTGAAGCGGTAGTGTTAGGTTTCCAGCATTATTTGTTGAGTCTTGGTAT 206
Query 189 CACAGTTCTCATTCCAAGTCTATTAGTTCCACTCATGGGAGGTGGTGATGCAGAAAAAGT 248
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 207 TACAGTTCTCATTCCGAGTCTATTAGTTCCACTCATGGGAGGTGGTGATGCAGAAAAGGT 266
Query 249 TAAAGTAATACAAACATTACTATTTGTGTCTGGATTAACAACATTGTTCCAGTCTTTCTT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 TAAAGTAATACAAACATTACTATTTGTGTCTGGATTAACAACATTGTTCCAGTCTTTCTT 326
Query 309 TGGAACTCGATTGCCTGTGATAGCTGCGGCTTCTTATGCCTATATCATACCTATCACTTC 368
||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct 327 TGGAACTCGATTGCCTGTGATCGCTTCGGCTTCTTATGCCTATATCATTCCTATCACTTC 386
Query 369 CATCATTTATTCGACCCGATTCACTTACTACACTGATCCTTTTGAAAGGTTTGTGAGAAC 428
|||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 387 CATCATTTATTCCACCAGATTCACTTACTACACGGATCCTTTTGAAAGGTTTGTGAGAAC 446
Query 429 AATGAGAAGCATACAAGGAGCTTTGATTATAACCGGATGTTTCCAAGTTCTTGTATGTTT 488
|||||||||||||||||||||| ||||||| || || ||||| ||||||||||| |||||
Sbjct 447 AATGAGAAGCATACAAGGAGCTCTGATTATCACTGGTTGTTTTCAAGTTCTTGTCTGTTT 506
Query 489 TCTAGGCGTATGGAGAAATATTGTTAGATTTCTAAGCCCACTCTCCATTGCTCCTTTGGC 548
|| || ||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 507 CCTCGGTGTATGGAGAAATATTGTGAGATTTCTAAGCCCTCTGTCGATTGCTCCTTTGGT 566
Query 549 AACATTTACCGGATTGGGACTCTACCACATTGGCTTCCCTTTG 591
||||||||||||||||||||||||||||||||| |||||||||
Sbjct 567 AACATTTACCGGATTGGGACTCTACCACATTGGTTTCCCTTTG 609
Score = 431 bits (233), Expect = 1e-119
Identities = 278/300 (93%), Gaps = 1/300 (0%)
Strand=Plus/Plus
Query 1103 AAAATGTTGGACTTTTGGCAATGACTAAGATTGGGAGTAGAAGAGTGATACAAATATCAG 1162
|||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 896 AAAATGTTGGACTTTTAGCAATGACTAAGGTTGGGAGTCGAAGGGTGATACAAATATCAG 955
Query 1163 CTGCCTTCATGCtttttttCTCTATTTTTGGAAAGTTTGGAGCGTTTTTCGCGTCAATAC 1222
| || ||||||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||
Sbjct 956 CAGCATTCATGCTTTTTTTCTCCATTTTTGGAAAATTTGGAGCTTTTTTTGCGTCCATAC 1015
Query 1223 CATTACCAATCATGGCATCTCTTTATTGCATCGTATTGTGTTTTGTATCTTCCGCGGGAC 1282
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 1016 CATTACCAATCATGGCATCTCTTTATTGCATCGTCTTGTGTTTTGTGTCTTCTGCGGGAC 1075
Query 1283 TTAGTTTTCTACAATTCTGCAACCTCAATAGCTTCAACACCAAATTCATTGTAGGATTTT 1342
|||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1076 TTAGCTTTCTACAATTTTGCAACCTCAATAGCTTCAACACCAAATTCATTTTGGGATTTT 1135
Query 1343 CTTTTTTCATGGCTATTTCAATCCCTCAATATTTCAGAGAATATTACAATGGAGGTTGGC 1402
||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||
Sbjct 1136 CTTTTTTCATGGCTATTTCAATCCCACAATACTTCAGAGAATACTACAATGGAG-TTGGC 1194
Score = 285 bits (154), Expect = 9e-76
Identities = 174/184 (95%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 674 TGAAAAAAGGGGCGATGATTTGGGATGGAAACAGATGCGACCGCTATGGGATGATGTTAT 733
|||| ||||| ||||||||||||||||||| ||||| ||||| ||||| ||||||||||
Sbjct 611 TGAAGAAAGGACCGATGATTTGGGATGGAAATAGATGTGACCGTTATGGAATGATGTTAT 670
Query 734 GCATTCCAGTGGTATGGTTGTTCGCTCAGCTACTCACATCGAGTGGTGTTTATGACCACA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GCATTCCAGTGGTATGGTTGTTCGCTCAGCTACTCACATCGAGTGGTGTTTATGACCACA 730
Query 794 AGTCTCAGACTACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTCATCACCAACACTC 853
|| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 731 AGCCTCAAACTACTCAAACCAGTTGTCGTACAGATCGTACTGGTCTAATCACCAACACTC 790
Query 854 CTTG 857
||||
Sbjct 791 CTTG 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5