BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894457
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25440.1 | Symbols: | Protein kinase superfamily protein | ... 1485 0.0
> AT5G25440.1 | Symbols: | Protein kinase superfamily protein
| chr5:8854775-8856758 REVERSE LENGTH=1178
Length=1178
Score = 1485 bits (804), Expect = 0.0
Identities = 898/944 (95%), Gaps = 4/944 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTGTCTCTCAGCTTCGACACCTCCCACCCAACCAAATGCTCCCATTTCAGTG 60
|||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 37 ATGGGAAATTGTCTCTCAGCTTCGACACTTCCCACCGAACCAAATGCTCCCAAATCAGTG 96
Query 61 GAGGAGGGTGTGAAAGTCATCACGGTGGCAGAGCTGAAGAAAGCGACTAATGATTTCGGA 120
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 97 GAGGAGGGTGTGAAAGTCTTCACGGTGGCAGATCTGAAGAAAGCGACTAATGATTTCGGA 156
Query 121 AACCAGATGGAAATAGGAGAGAGCTTGGGATATATCAATCCCAAGACGTTATCTCCGGCC 180
|||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 157 AACCAGATGGAACTAGGAGAGAGCTTGGGATACATCAATCCCAAAACGTTATCTCCGGCC 216
Query 181 AAGAAAGGTGTTGGCATGGCCGTCGCGGTCAAGAAAATTTACTTAGCCAATGAACAAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AAGAAAGGTGTTGGCATGGCCGTCGCGGTCAAGAAAATTTACTTAGCCAATGAACAAGCT 276
Query 241 TTTCAAGATTGGCTTGTTGACGTAGAGTTTCTACGACATAATTCTCATCCAAGCTTGGTG 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 277 TTTCAAGATTGGCTTGTTGACGTAGAGTTTCTACGACATAACTCTCATCCAAGCTTGGTG 336
Query 301 AAACTCATTGGCTACGGTTATGATCGTGATATGTTGTTTATTGTTTCTGAATACTTTCCA 360
|| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AAGCTAATTGGCTACTGTTATGATCGTGATATGTTGTTTATTGTTTCTGAATACTTTCCA 396
Query 361 AATGGAAGCTTAGGAAGTTACATT-GATAGAGATAGTCGTCCAAAGTCATTGCCGTGGGA 419
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 397 AATGGAAGCTTAGGAAGTTACATCAG-TAGAGATAGTCGTCCAAAGTCATTGCCGTGGGA 455
Query 420 GACACGACTCAAGATATCCATAGGAGCGGCTCATTGTCTTGCCTTCTTGCACTCTAGGAA 479
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 456 GACACGACTTAAGATATCCATAGGAGCGGCTCAGTGTCTTGCCTTCTTGCACTCTAGGAA 515
Query 480 GCAAGCCGGCCTCTACCGCAGATACCTCACCGCTTCGAAAATCCTGCTCGATTCAGACTT 539
||||||||| || ||||||||||| ||||| |||||||||||||||||||| || |||||
Sbjct 516 GCAAGCCGGTCTATACCGCAGATATCTCACTGCTTCGAAAATCCTGCTCGACTCGGACTT 575
Query 540 CAACGCAAGAGTTTCCTATTTTGGAAAGCCAAAAGTTTCTCTCGATGAACTGGTACACGC 599
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 576 CAACGCAAGAGTTTCCTATTTTGGAAAGCCAAAAGTTTCTCTCGATGAATTGGTATACAC 635
Query 600 CAGAGGGTTTGCAAATGTAGCACCTAGATATCAATACCCACCTCCCGAATACATACTCTC 659
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CATCGGGTTTTCAAATGTAGCACCTAGATATCAATACCCACCTCCCGAATACATACTCTC 695
Query 660 AGGGATGTCGAACATGGCGGGCGATGTGTACAGCTTTGGTGTTATACTACTTAAAATGTT 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 696 AGGGATGTCGAACATGGCGGGCGATGTGTATAGCTTTGGTGTTATACTACTTAAAATGTT 755
Query 720 AACTGGTTTAGGAAA-GCACCTCATAATCTCAGTAAAGCGAGAAATAAAAAATAAAAGGG 778
||||||||||||||| | |||||| |||||||| ||||||||||||||||||||||| |
Sbjct 756 AACTGGTTTAGGAAAAG-ACCTCACAATCTCAGCAAAGCGAGAAATAAAAAATAAAAAGT 814
Query 779 ACAACATTGAGGAGATGATCGATCCAGATTTGAAGAATAGCTATCCTCTTGAAGCGGGAA 838
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 815 ACAACATTGTGGAGATGATCGATCCAGATTTGAAGAATAGCTATCCACTTGAAGCGGGAA 874
Query 839 GACTTCTGTGCGAGCTTATTAAACAATGCCTTGAGGTAGACCCGAAGATACGACCAACCA 898
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 875 GACTTATGTGCGAGCTTATTAAACAATGCCTAGAGGTAGACCCGAAGATGCGACCAACCA 934
Query 899 TGCAACAAGTGCTAGATAATCTGAATGCTATAGCCCTGTTTTGA 942
||||| |||||||||||||||||||||||||||| | | |||||
Sbjct 935 TGCAAGAAGTGCTAGATAATCTGAATGCTATAGCTCAGATTTGA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5