BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894458

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25450.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kD...   593    3e-169


> AT5G25450.1 | Symbols:  | Cytochrome bd ubiquinol oxidase, 14kDa 
subunit | chr5:8856997-8858476 FORWARD LENGTH=1035
Length=1035

 Score =  593 bits (321),  Expect = 3e-169
 Identities = 354/370 (96%), Gaps = 2/370 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGTCGTTTCTCCAGAGACTAGTTGATCCCAGGAAGAATTTCTTAGCTCGTATGCAT  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  40   ATGGCGTCGTTTCTCCAGAGACTAGTAGATCCCAGGAAGAATTTCTTAGCTCGTATGCAT  99

Query  61   ATGAAGTCTGTTTCTAATCGCCTTCGCAGATACGGTCTTAGATACGACGATCTATATGAT  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  100  ATGAAGTCTGTTTCTAATCGCCTCCGCAGATACGGTCTTAGATACGACGATCTTTATGAT  159

Query  121  CCTTTGTATGACTTGGATATTAAGGAAGCTCTTAATCGGTTACCGAGAGAGATCGTTGAT  180
            ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct  160  CCTTTGTATGATTTGGATATTAAAGAAGCTCTTAATCGTTTACCGAGAGAGATTGTTGAT  219

Query  181  GCTCGGAACCAGCGT-TTAAAGCGTGCAATGGATCTTTCTATGAAACACGACTACCTCCC  239
            ||||||||||||||| |||  ||||||||||||||||||||||||||| || ||||||||
Sbjct  220  GCTCGGAACCAGCGTCTTAT-GCGTGCAATGGATCTTTCTATGAAACATGAATACCTCCC  278

Query  240  AGATAATCTTCAGGCAATGCAGACACCATTCAGGAGTTACCTCCAAGACATGTTGGCTCT  299
            |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  279  AGATAATCTTCAGGCAGTGCAGACTCCATTCAGGAGCTACCTCCAAGACATGTTGGCTCT  338

Query  300  TGTGAAGCGGGAGAGAGCTGAGCGAGAGGCTTTGGGAGCTTTACCTCTCTACCAAAGAAC  359
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  339  TGTGAAGCGGGAGAGAGCTGAGAGAGAGGCTTTGGGAGCTTTACCTCTCTACCAAAGAAC  398

Query  360  CATTCCTTAA  369
            ||||||||||
Sbjct  399  CATTCCTTAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5