BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894459
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25440.1 | Symbols: | Protein kinase superfamily protein | ... 433 2e-120
AT5G25451.1 | Symbols: | Pseudogene of AT5G25440; protein kina... 294 1e-78
AT5G25450.1 | Symbols: | Cytochrome bd ubiquinol oxidase, 14kD... 294 1e-78
> AT5G25440.1 | Symbols: | Protein kinase superfamily protein
| chr5:8854775-8856758 REVERSE LENGTH=1178
Length=1178
Score = 433 bits (234), Expect = 2e-120
Identities = 441/536 (82%), Gaps = 33/536 (6%)
Strand=Plus/Plus
Query 158 CAGTGGAGGAAGGTGTGAAAGTATTCACTATGGTGGAGCTGAAGAAAGCGACCAA-GAAT 216
|||||||||| ||||||||||| ||||| ||| || |||||||||||||| || | ||
Sbjct 92 CAGTGGAGGAGGGTGTGAAAGTCTTCACGGTGGCAGATCTGAAGAAAGCGACTAATG-AT 150
Query 217 TTTGGAAAGGAGAGGGTAA-TAGGAGACAGCTATGGCGAAGTAGTGAGGGGATATATCAA 275
|| ||||| ||| || || |||||| || | || | | |||||| |||||
Sbjct 151 TTCGGAAACCAGATGG-AACTAGGAG--AG--A--GC----T--T---GGGATACATCAA 194
Query 276 TCCCAAGACTTTATCTCCAGCTAAGGAAGGTGTTGGCATGGCCGTCGCCGTTAAGAGATT 335
|||||| || |||||||| || ||| |||||||||||||||||||||| || |||| | |
Sbjct 195 TCCCAAAACGTTATCTCCGGCCAAGAAAGGTGTTGGCATGGCCGTCGCGGTCAAGAAAAT 254
Query 336 TTACTTA-AAATATGAGGAAGCCTTGCAAAAGTGCCTTGTTGACTTGGAGATTCTGCGAC 394
||||||| | |||| |||| || ||| | || ||||||||| | ||| |||| ||||
Sbjct 255 TTACTTAGCCA-ATGAACAAGCTTTTCAAGATTGGCTTGTTGACGTAGAGTTTCTACGAC 313
Query 395 ATAACTCTCATCCAAGCTTGGTGAAGCTCATTGGTTATGGTTATGGTTATGATCATGAAA 454
|||||||||||||||||||||||||||| ||||| || | ||||||||| ||| |
Sbjct 314 ATAACTCTCATCCAAGCTTGGTGAAGCTAATTGGCTA-----CT-GTTATGATCGTGATA 367
Query 455 AGTTGTTCATTGTTTCTGAATACTTTCCAAACGGAAGCTTA-GAACGTTACATTTTTAGG 513
|||||| ||||||||||||||||||||||| ||||||||| ||| ||||||| || |
Sbjct 368 TGTTGTTTATTGTTTCTGAATACTTTCCAAATGGAAGCTTAGGAA-GTTACATCAGTA-G 425
Query 514 A-AGAGTCGTCCAAAGTCATTGCCGTGGGAGACACGACTTAAGATATCCATAGAAGGGGC 572
| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 426 AGATAGTCGTCCAAAGTCATTGCCGTGGGAGACACGACTTAAGATATCCATAGGAGCGGC 485
Query 573 TCGGTGTCTTGCCTTCTTGCACTCTAGGAAAAAAGACGGTCTCTATCGCACATGTCTCAC 632
|| ||||||||||||||||||||||||||| ||| |||||| || |||| || ||||||
Sbjct 486 TCAGTGTCTTGCCTTCTTGCACTCTAGGAAGCAAGCCGGTCTATACCGCAGATATCTCAC 545
Query 633 TGCTT-GTAATATCCTGCTTGATTCGGAGTTCAACGCAAGAGTTTCTTATTTTGGA 687
||||| | || |||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 546 TGCTTCGAAA-ATCCTGCTCGACTCGGACTTCAACGCAAGAGTTTCCTATTTTGGA 600
Score = 267 bits (144), Expect = 2e-70
Identities = 241/285 (85%), Gaps = 18/285 (6%)
Strand=Plus/Plus
Query 826 TCGCACATGGCAGGCGATGTATACAGCTTCGGTGTTATACTACTTGAGATCTTAACTGGT 885
||| ||||||| |||||||| || ||||| ||||||||||||||| | || |||||||||
Sbjct 703 TCGAACATGGCGGGCGATGTGTATAGCTTTGGTGTTATACTACTTAAAATGTTAACTGGT 762
Query 886 TTGA-G-AAA-CCCGTGCATC-ATCCT-AGCAAAGCAAGCAACACAAAATGGAAAAG-AA 939
|| | | ||| || | || | || || |||||||| || || | ||||| ||||| |
Sbjct 763 TT-AGGAAAAGACC-T-CA-CAAT-CTCAGCAAAGCGAGAAATAAAAAAT-AAAAAGTAC 816
Query 940 AACATTGCAGAGATTATCGATCCAGATTTAG-AGAATAGCTATCCTCTTGCAGCGGGAAA 998
||||||| ||||| |||||||||||||| | ||||||||||||| |||| ||||||||
Sbjct 817 AACATTGTGGAGATGATCGATCCAGATTT-GAAGAATAGCTATCCACTTGAAGCGGGAAG 875
Query 999 ACTTATGTGCGAGCTTAGTAAACAATGCCTTGAGGACA-ACCCGAAGATAAGACCAACCA 1057
||||||||||||||||| |||||||||||| |||| | |||||||||| |||||||||
Sbjct 876 ACTTATGTGCGAGCTTATTAAACAATGCCTAGAGG-TAGACCCGAAGATGCGACCAACCA 934
Query 1058 TGCAAGAAGTGCTAGATAATCTGAATGCTATAGGC-CAGATTTGA 1101
||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 935 TGCAAGAAGTGCTAGATAATCTGAATGCTATAG-CTCAGATTTGA 978
> AT5G25451.1 | Symbols: | Pseudogene of AT5G25440; protein kinase
family protein | chr5:8858201-8858951 REVERSE LENGTH=671
Length=671
Score = 294 bits (159), Expect = 1e-78
Identities = 240/279 (86%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 825 ATCGCACATGGCAGGCGATGTATACAGCTTCGGTGTTATACTACTTGAGATCTTAACTGG 884
||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 397 ATCACACATGGCGGGCGATGTATACAGCTTCGGTGTTATACTATTTGAGATCTTAACTGG 456
Query 885 TTTGAGAAACCCGTGCATCATCCTAGCAAAGCAAGCAACACAAAATGGAAAAGAAAACAT 944
|||| ||||||||||||||||| ||||| || |||||||| | ||| |||||||||||||
Sbjct 457 TTTGGGAAACCCGTGCATCATCTTAGCAGAGGAAGCAACAGAGAATAGAAAAGAAAACAT 516
Query 945 TGCAGAGATTATCGATCCAGATTTAGAGAATAGCTATCCTCTTGCAGCGGGAAAACTTAT 1004
|| || || |||||||||||||||||||||||||||| | ||| || ||| | | |||
Sbjct 517 TGTGGAAATGATCGATCCAGATTTAGAGAATAGCTATCGTGTTGAAGAGGGGATGCGTAT 576
Query 1005 GTGCGAGCTTAGTAAACAATGCCTTGAG-GACAACCCGAAG-ATAAGACCAACCATGCAA 1062
|||| |||| | |||| | |||||||| || | ||| ||| | ||||||| ||||||||
Sbjct 577 GTGCAAGCTCA-TAAA-ACTGCCTTGAAAGAGATCCC-AAGGA-AAGACCATCCATGCAA 632
Query 1063 GAAGTGCTAGATAATCTGAATGCTATAGGCCAGATTTGA 1101
|||||||||||||| |||||||||||| ||| ||||||
Sbjct 633 CAAGTGCTAGATAATTTGAATGCTATAGCCCATATTTGA 671
Score = 261 bits (141), Expect = 1e-68
Identities = 213/245 (87%), Gaps = 15/245 (6%)
Strand=Plus/Plus
Query 271 ATCAATCCCAAGACTTTATCTCCAGCTAAGGAAGGTGTTGGCATGGCCGTCGCCGTTAAG 330
|||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 4 ATCAATCCCAAGACGTTATCTCCATCTAAGGAAGGTGTTGGCATGGCCATCGCCGTTAAG 63
Query 331 AGATTTTACTTAAAATATGAGGAAGCCTTGCAAAAGTGCCTTGTTGACTTGGAGATTCTG 390
||||||||||||| ||||| |||||||||||||| | |||||| | ||| ||||
Sbjct 64 AGATTTTACTTAACCTATGAAGAAGCCTTGCAAAA--G----GTTGACCTAGAGTTTCTA 117
Query 391 CGACATAACTCT-CATCCAAGCTTGGTGAAGCTCATTGGTTATGGTTATGGTTATGATCA 449
||||||||| || |||||||||||||| |||||||||||||| |||| || ||| |
Sbjct 118 CGACATAAC-CTGCATCCAAGCTTGGTCAAGCTCATTGGTTACGGTT-CGG--ATG---A 170
Query 450 TGAAAAGTTGTTCATTGTTTCTGAATACTTTCCAAACGGAAGCTTAGAACGTTACATTTT 509
| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 171 T-AATTGTTGTTCATTGTTTCTGAATACTTTCCAAACGGAAGCTTAGAGCGTTACATTTA 229
Query 510 TAGGA 514
|||||
Sbjct 230 TAGGA 234
> AT5G25450.1 | Symbols: | Cytochrome bd ubiquinol oxidase, 14kDa
subunit | chr5:8856997-8858476 FORWARD LENGTH=1035
Length=1035
Score = 294 bits (159), Expect = 1e-78
Identities = 240/279 (86%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 825 ATCGCACATGGCAGGCGATGTATACAGCTTCGGTGTTATACTACTTGAGATCTTAACTGG 884
||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1034 ATCACACATGGCGGGCGATGTATACAGCTTCGGTGTTATACTATTTGAGATCTTAACTGG 975
Query 885 TTTGAGAAACCCGTGCATCATCCTAGCAAAGCAAGCAACACAAAATGGAAAAGAAAACAT 944
|||| ||||||||||||||||| ||||| || |||||||| | ||| |||||||||||||
Sbjct 974 TTTGGGAAACCCGTGCATCATCTTAGCAGAGGAAGCAACAGAGAATAGAAAAGAAAACAT 915
Query 945 TGCAGAGATTATCGATCCAGATTTAGAGAATAGCTATCCTCTTGCAGCGGGAAAACTTAT 1004
|| || || |||||||||||||||||||||||||||| | ||| || ||| | | |||
Sbjct 914 TGTGGAAATGATCGATCCAGATTTAGAGAATAGCTATCGTGTTGAAGAGGGGATGCGTAT 855
Query 1005 GTGCGAGCTTAGTAAACAATGCCTTGAG-GACAACCCGAAG-ATAAGACCAACCATGCAA 1062
|||| |||| | |||| | |||||||| || | ||| ||| | ||||||| ||||||||
Sbjct 854 GTGCAAGCTCA-TAAA-ACTGCCTTGAAAGAGATCCC-AAGGA-AAGACCATCCATGCAA 799
Query 1063 GAAGTGCTAGATAATCTGAATGCTATAGGCCAGATTTGA 1101
|||||||||||||| |||||||||||| ||| ||||||
Sbjct 798 CAAGTGCTAGATAATTTGAATGCTATAGCCCATATTTGA 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5