BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894461
Length=843
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25470.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1131 0.0
AT5G25475.4 | Symbols: | AP2/B3-like transcriptional factor fa... 442 3e-123
> AT5G25470.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:8865651-8867637 REVERSE LENGTH=1198
Length=1198
Score = 1131 bits (612), Expect = 0.0
Identities = 775/852 (91%), Gaps = 17/852 (2%)
Strand=Plus/Plus
Query 1 ATGTTGCCTAAGAGTGTTACTGATAAGATTCAAGAAAATGTGAGCAAGCCTTGCTTTTGG 60
|||||||||| || || |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 153 ATGTTGCCTAGGAATGCTACTGATAAGATACAAGGAAATGTGAGCAAGCCTTGCTTTTGG 212
Query 61 AAGTCTCTTTCTCCAGGACAAAACTGGAAATCTAAATCCATGAGGAGTTTTCCGGCGGAG 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 213 AAGTCTCTGTCTCCAGGACAAAACTGGAAATCTAAATCCATGAGGAGTTTTCCGGAAGAG 272
Query 121 TTTGTGATAAGCACGCCCAGGTCTTTAGAGCACAGAGTGGTGTTTAGTGTTCGTTGGGGC 180
||||||| |||||||||| || |||| ||||||||||| ||||| |||||||||||||||
Sbjct 273 TTTGTGAAAAGCACGCCCGGGGCTTTTGAGCACAGAGTTGTGTTCAGTGTTCGTTGGGGC 332
Query 181 AATTCCTGGCAACTTTGGCTGGAGCGAGAA-AAAGAAGATCTGTTTATGATAGAAGAAGA 239
||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 333 AATTCTTGGCAACTCTGGCTGGAGCGAGAAGAAA-AAGATCTGTTTATGATAGAAGAAGA 391
Query 240 TTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAACTTGTTCTTCAAACA 299
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 392 TTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAACGTGTTCTTCAGACA 451
Query 300 CGATAACACGATGTTTCTTGATGTGCAAATCTTTAAGAATGATGGGAAAGAGATCATCGA 359
|||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 452 CGATGACAAGATGTTTCTTGAAGTGCAAATCTTTAAGAATGATGGGAACGAGATCATCGA 511
Query 360 TGCACCTCTTGAAGTTGAACCTGAAATTGAACAACTTCATCCTACTACACCGAAGAATTT 419
|||||||| ||||||||||||||||| ||||| | |||||||||||||||| || ||||
Sbjct 512 TGCACCTCCTGAAGTTGAACCTGAAACTGAACCATTTCATCCTACTACACCAAAAAATTC 571
Query 420 TCACAAGGAGACAACC-CA---T--GCCTCTGCTTCTGCTTCTGAATTCTCAGAAAAT-G 472
|||||||||||||||| | | ||||||||||||||||||||||| ||||| ||| |
Sbjct 572 TCACAAGGAGACAACCACTGCCTCTGCCTCTGCTTCTGCTTCTGAATTTTCAGACAATTG 631
Query 473 GTCCAGAGAGACAGGGTTGTGCTGATGTCAAAAACCCCGAGCTATATCTTCTAAACCCGA 532
| | ||||| ||| |||||||||||| |||||||||| ||||| || ||||||||||| |
Sbjct 632 G-CGAGAGACACATGGTTGTGCTGATATCAAAAACCCTGAGCTGTACCTTCTAAACCCCA 690
Query 533 AAAACCCTTACTTTGTGAAAACGCTGTCGAAAAGG-AATGACGTTTTGTATGTGCCCAAA 591
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 691 AAAACCCTTACTTTGTGAAAACGCTGAC-AAAAGGGAATGACGTTTTGTATGTGCCCAAA 749
Query 592 CCGGTGATTAAGAAGTATGGCTTGAAGTTTGGTCCC-ACTCATTCCCCGATGCATTACCT 650
| ||||||||||||||||||||||||||||||||| | | | |||| |||||||||||
Sbjct 750 ACAGTGATTAAGAAGTATGGCTTGAAGTTTGGTCCCCATTTGTCCCCC-ATGCATTACCT 808
Query 651 TCTTCCCGGAGATAAAATCAATGGCTTGACTAAGCTCTATGGTGGTGGC-GATGCCCCTT 709
|||||||||||||||||| ||||||| |||||| ||||||| |||||| | ||||||||
Sbjct 809 TCTTCCCGGAGATAAAATAAATGGCTCCACTAAGATCTATGGCGGTGGCAG-TGCCCCTT 867
Query 710 GTTTCAATGGCTGGGTGGGTCTATGTCGAAAGTACAATCTGAAAACTGGAGACTCTGTGG 769
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 868 GTTTCAATGGCTGGGTGGACCTATGTCGAAAGTACAATCTGAAAACCGGAGACTCTATGG 927
Query 770 TTTGTGAACTTGAACGCTCAGGAGATCTGGTTACTGCTGTTAGAGTGCATTTCATCAATG 829
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 928 TTTGTGAACTTGAACGCTCTGGAGAACTGGTTACTGCTGTTAGAGTGCACTTCATCAAT- 986
Query 830 AAAATATGAGAT 841
|||| |||||||
Sbjct 987 AAAACATGAGAT 998
> AT5G25475.4 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:8867797-8869821 REVERSE LENGTH=1234
Length=1234
Score = 442 bits (239), Expect = 3e-123
Identities = 598/761 (79%), Gaps = 65/761 (9%)
Strand=Plus/Plus
Query 110 TTCCGGCGGAGTTTGTGATAAGCACGCCCAGGT-CTTTAGAGCACAGAGTGGTGTTTAGT 168
|||||| || ||||||| ||| ||| | ||| |||| |||||||||||||||||||||
Sbjct 372 TTCCGGAAGACTTTGTGAGAAGAACG-CGTGGTGCTTTTGAGCACAGAGTGGTGTTTAGT 430
Query 169 GTTCGTTGGGGCAATTCCTGGCAACTTTGGCTGGAGCGAGAAAAAGAA-GATCTGTTTAT 227
|||||||||| || ||||||||||| |||||||||||||| || ||| || ||||||||
Sbjct 431 GTTCGTTGGGAAAACTCCTGGCAACTCTGGCTGGAGCGAGAGAA-GAACGAGCTGTTTAT 489
Query 228 GATAGAAGAAGATTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAA-CT 286
|||||||||||||||| |||||||||| || ||||| |||||||| ||||||||||| ||
Sbjct 490 GATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGATAATCT 549
Query 287 TGTTCTTCAAACACGATAACACGATGTTTCTTGATGTGCAAATCTTTAAGAATGATGGGA 346
|||| ||||||||||| | |||||| |||||| |||||||||||||||||| |||||
Sbjct 550 -GTTCATCAAACACGATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAATGGGG 608
Query 347 AAGAGATCATCGATGCACCTCTTGAAGTTGAACCTGAAATTGAACAACTTCATCCTACTA 406
|||||||| |||| |||||||| ||||||||| |||| ||||| | ||||||||||
Sbjct 609 TTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATCCTACG- 667
Query 407 CACCGAAGAATTTTCACAAGGAGACAACCCATGCCTCTGC-TTCTGC-T-T--CT--GAA 459
| || ||||| ||||||||||||||||| ||||||| | || ||| | | || |
Sbjct 668 C-CC-AAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTT-TGCCTCTGGCTCTGGC 724
Query 460 T--TCT-CA---G-A---A-AA-TGGTCCAGAG-AGA-CAGGGTTGT-GCTGATGTCAAA 504
| ||| || | | | || ||| || ||| | | || ||| | | ||||||||||
Sbjct 725 TGCTCTGCAAATGGAGGGACAAATGG-CC-GAGGAAAACAACGTTCTAG-TGATGTCAAA 781
Query 505 AACCCCGAGCTATATCTTCTA-AACCC-GAAAAACCCTTACTTTGTGAAAACGCTGTCGA 562
||||| |||| ||| || || || || ||||| ||||||||||||| || || || | |
Sbjct 782 AACCCTGAGCGATACCT-CTTGAATCCTGAAAA-CCCTTACTTTGTGCAAGCGGTGACAA 839
Query 563 AAAGGAATGACGTTTTGTATGTGC-CCAAACCGGTGATTAAGAAG-TATGGCTTGAAGTT 620
||||||| |||||| |||||||| || | |||||| || ||| | ||| ||||||||||
Sbjct 840 AAAGGAACGACGTTCTGTATGTGAGCCGA-CCGGTGGTTCAGA-GCTATCGCTTGAAGTT 897
Query 621 TGGTCCCACTCATTCC-CCGATG-CATTACCTTCTTCCCGG--AGATAAAATC--AATGG 674
||||||| | | ||| || || | | | ||||||||||| ||| |||| || ||
Sbjct 898 TGGTCCCGTTAAGTCCACC-ATTACCT-ATCTTCTTCCCGGGGAGAAAAAAGAGGAA-GG 954
Query 675 CTTGACTA-AGCTCTATGGTGGTGGCGATGCCCCTTGTTTCAATGGCTGGGTGGGT-CTA 732
| || || | ||||| || | | || |||||||| ||||||| | ||| |||
Sbjct 955 CGAGAATAGAA-TCTATAACGG-GAA-A--CC--TTGTTTCAGTGGCTGG-TCGGTTCTA 1006
Query 733 TGTCGAAAGTACAATCTGAAAA-CTGGAGACTCTGTGGTTTGTGAACTTGAACGCTCAGG 791
||||| | | |||||||||| | | |||||||| ||||||||||||||||||||||| ||
Sbjct 1007 TGTCGGAGGCACAATCTGAATATC-GGAGACTCCGTGGTTTGTGAACTTGAACGCTCCGG 1065
Query 792 AGATCTGGTTACTGCTGTTAGAGTGCATTTCATCAATGAAA 832
| | ||||||| ||||| |||||||||||| |||| ||||
Sbjct 1066 TGGTGTGGTTACCGCTGTAAGAGTGCATTTCGTCAA-GAAA 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41091532246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5