BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894461 Length=843 Score E Sequences producing significant alignments: (Bits) Value AT5G25470.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1131 0.0 AT5G25475.4 | Symbols: | AP2/B3-like transcriptional factor fa... 442 3e-123 > AT5G25470.1 | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:8865651-8867637 REVERSE LENGTH=1198 Length=1198 Score = 1131 bits (612), Expect = 0.0 Identities = 775/852 (91%), Gaps = 17/852 (2%) Strand=Plus/Plus Query 1 ATGTTGCCTAAGAGTGTTACTGATAAGATTCAAGAAAATGTGAGCAAGCCTTGCTTTTGG 60 |||||||||| || || |||||||||||| |||| ||||||||||||||||||||||||| Sbjct 153 ATGTTGCCTAGGAATGCTACTGATAAGATACAAGGAAATGTGAGCAAGCCTTGCTTTTGG 212 Query 61 AAGTCTCTTTCTCCAGGACAAAACTGGAAATCTAAATCCATGAGGAGTTTTCCGGCGGAG 120 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 213 AAGTCTCTGTCTCCAGGACAAAACTGGAAATCTAAATCCATGAGGAGTTTTCCGGAAGAG 272 Query 121 TTTGTGATAAGCACGCCCAGGTCTTTAGAGCACAGAGTGGTGTTTAGTGTTCGTTGGGGC 180 ||||||| |||||||||| || |||| ||||||||||| ||||| ||||||||||||||| Sbjct 273 TTTGTGAAAAGCACGCCCGGGGCTTTTGAGCACAGAGTTGTGTTCAGTGTTCGTTGGGGC 332 Query 181 AATTCCTGGCAACTTTGGCTGGAGCGAGAA-AAAGAAGATCTGTTTATGATAGAAGAAGA 239 ||||| |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 333 AATTCTTGGCAACTCTGGCTGGAGCGAGAAGAAA-AAGATCTGTTTATGATAGAAGAAGA 391 Query 240 TTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAACTTGTTCTTCAAACA 299 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 392 TTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAACGTGTTCTTCAGACA 451 Query 300 CGATAACACGATGTTTCTTGATGTGCAAATCTTTAAGAATGATGGGAAAGAGATCATCGA 359 |||| ||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 452 CGATGACAAGATGTTTCTTGAAGTGCAAATCTTTAAGAATGATGGGAACGAGATCATCGA 511 Query 360 TGCACCTCTTGAAGTTGAACCTGAAATTGAACAACTTCATCCTACTACACCGAAGAATTT 419 |||||||| ||||||||||||||||| ||||| | |||||||||||||||| || |||| Sbjct 512 TGCACCTCCTGAAGTTGAACCTGAAACTGAACCATTTCATCCTACTACACCAAAAAATTC 571 Query 420 TCACAAGGAGACAACC-CA---T--GCCTCTGCTTCTGCTTCTGAATTCTCAGAAAAT-G 472 |||||||||||||||| | | ||||||||||||||||||||||| ||||| ||| | Sbjct 572 TCACAAGGAGACAACCACTGCCTCTGCCTCTGCTTCTGCTTCTGAATTTTCAGACAATTG 631 Query 473 GTCCAGAGAGACAGGGTTGTGCTGATGTCAAAAACCCCGAGCTATATCTTCTAAACCCGA 532 | | ||||| ||| |||||||||||| |||||||||| ||||| || ||||||||||| | Sbjct 632 G-CGAGAGACACATGGTTGTGCTGATATCAAAAACCCTGAGCTGTACCTTCTAAACCCCA 690 Query 533 AAAACCCTTACTTTGTGAAAACGCTGTCGAAAAGG-AATGACGTTTTGTATGTGCCCAAA 591 |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| Sbjct 691 AAAACCCTTACTTTGTGAAAACGCTGAC-AAAAGGGAATGACGTTTTGTATGTGCCCAAA 749 Query 592 CCGGTGATTAAGAAGTATGGCTTGAAGTTTGGTCCC-ACTCATTCCCCGATGCATTACCT 650 | ||||||||||||||||||||||||||||||||| | | | |||| ||||||||||| Sbjct 750 ACAGTGATTAAGAAGTATGGCTTGAAGTTTGGTCCCCATTTGTCCCCC-ATGCATTACCT 808 Query 651 TCTTCCCGGAGATAAAATCAATGGCTTGACTAAGCTCTATGGTGGTGGC-GATGCCCCTT 709 |||||||||||||||||| ||||||| |||||| ||||||| |||||| | |||||||| Sbjct 809 TCTTCCCGGAGATAAAATAAATGGCTCCACTAAGATCTATGGCGGTGGCAG-TGCCCCTT 867 Query 710 GTTTCAATGGCTGGGTGGGTCTATGTCGAAAGTACAATCTGAAAACTGGAGACTCTGTGG 769 |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| Sbjct 868 GTTTCAATGGCTGGGTGGACCTATGTCGAAAGTACAATCTGAAAACCGGAGACTCTATGG 927 Query 770 TTTGTGAACTTGAACGCTCAGGAGATCTGGTTACTGCTGTTAGAGTGCATTTCATCAATG 829 ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| Sbjct 928 TTTGTGAACTTGAACGCTCTGGAGAACTGGTTACTGCTGTTAGAGTGCACTTCATCAAT- 986 Query 830 AAAATATGAGAT 841 |||| ||||||| Sbjct 987 AAAACATGAGAT 998 > AT5G25475.4 | Symbols: | AP2/B3-like transcriptional factor family protein | chr5:8867797-8869821 REVERSE LENGTH=1234 Length=1234 Score = 442 bits (239), Expect = 3e-123 Identities = 598/761 (79%), Gaps = 65/761 (9%) Strand=Plus/Plus Query 110 TTCCGGCGGAGTTTGTGATAAGCACGCCCAGGT-CTTTAGAGCACAGAGTGGTGTTTAGT 168 |||||| || ||||||| ||| ||| | ||| |||| ||||||||||||||||||||| Sbjct 372 TTCCGGAAGACTTTGTGAGAAGAACG-CGTGGTGCTTTTGAGCACAGAGTGGTGTTTAGT 430 Query 169 GTTCGTTGGGGCAATTCCTGGCAACTTTGGCTGGAGCGAGAAAAAGAA-GATCTGTTTAT 227 |||||||||| || ||||||||||| |||||||||||||| || ||| || |||||||| Sbjct 431 GTTCGTTGGGAAAACTCCTGGCAACTCTGGCTGGAGCGAGAGAA-GAACGAGCTGTTTAT 489 Query 228 GATAGAAGAAGATTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAA-CT 286 |||||||||||||||| |||||||||| || ||||| |||||||| ||||||||||| || Sbjct 490 GATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGATAATCT 549 Query 287 TGTTCTTCAAACACGATAACACGATGTTTCTTGATGTGCAAATCTTTAAGAATGATGGGA 346 |||| ||||||||||| | |||||| |||||| |||||||||||||||||| ||||| Sbjct 550 -GTTCATCAAACACGATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAATGGGG 608 Query 347 AAGAGATCATCGATGCACCTCTTGAAGTTGAACCTGAAATTGAACAACTTCATCCTACTA 406 |||||||| |||| |||||||| ||||||||| |||| ||||| | |||||||||| Sbjct 609 TTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATCCTACG- 667 Query 407 CACCGAAGAATTTTCACAAGGAGACAACCCATGCCTCTGC-TTCTGC-T-T--CT--GAA 459 | || ||||| ||||||||||||||||| ||||||| | || ||| | | || | Sbjct 668 C-CC-AAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTT-TGCCTCTGGCTCTGGC 724 Query 460 T--TCT-CA---G-A---A-AA-TGGTCCAGAG-AGA-CAGGGTTGT-GCTGATGTCAAA 504 | ||| || | | | || ||| || ||| | | || ||| | | |||||||||| Sbjct 725 TGCTCTGCAAATGGAGGGACAAATGG-CC-GAGGAAAACAACGTTCTAG-TGATGTCAAA 781 Query 505 AACCCCGAGCTATATCTTCTA-AACCC-GAAAAACCCTTACTTTGTGAAAACGCTGTCGA 562 ||||| |||| ||| || || || || ||||| ||||||||||||| || || || | | Sbjct 782 AACCCTGAGCGATACCT-CTTGAATCCTGAAAA-CCCTTACTTTGTGCAAGCGGTGACAA 839 Query 563 AAAGGAATGACGTTTTGTATGTGC-CCAAACCGGTGATTAAGAAG-TATGGCTTGAAGTT 620 ||||||| |||||| |||||||| || | |||||| || ||| | ||| |||||||||| Sbjct 840 AAAGGAACGACGTTCTGTATGTGAGCCGA-CCGGTGGTTCAGA-GCTATCGCTTGAAGTT 897 Query 621 TGGTCCCACTCATTCC-CCGATG-CATTACCTTCTTCCCGG--AGATAAAATC--AATGG 674 ||||||| | | ||| || || | | | ||||||||||| ||| |||| || || Sbjct 898 TGGTCCCGTTAAGTCCACC-ATTACCT-ATCTTCTTCCCGGGGAGAAAAAAGAGGAA-GG 954 Query 675 CTTGACTA-AGCTCTATGGTGGTGGCGATGCCCCTTGTTTCAATGGCTGGGTGGGT-CTA 732 | || || | ||||| || | | || |||||||| ||||||| | ||| ||| Sbjct 955 CGAGAATAGAA-TCTATAACGG-GAA-A--CC--TTGTTTCAGTGGCTGG-TCGGTTCTA 1006 Query 733 TGTCGAAAGTACAATCTGAAAA-CTGGAGACTCTGTGGTTTGTGAACTTGAACGCTCAGG 791 ||||| | | |||||||||| | | |||||||| ||||||||||||||||||||||| || Sbjct 1007 TGTCGGAGGCACAATCTGAATATC-GGAGACTCCGTGGTTTGTGAACTTGAACGCTCCGG 1065 Query 792 AGATCTGGTTACTGCTGTTAGAGTGCATTTCATCAATGAAA 832 | | ||||||| ||||| |||||||||||| |||| |||| Sbjct 1066 TGGTGTGGTTACCGCTGTAAGAGTGCATTTCGTCAA-GAAA 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41091532246 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5