BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894468
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25530.1 | Symbols: | DNAJ heat shock family protein | chr5... 1546 0.0
AT1G11040.1 | Symbols: | HSP40/DnaJ peptide-binding protein | ... 56.5 5e-07
> AT5G25530.1 | Symbols: | DNAJ heat shock family protein | chr5:8889665-8890954
REVERSE LENGTH=1044
Length=1044
Score = 1546 bits (837), Expect = 0.0
Identities = 979/1048 (93%), Gaps = 8/1048 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGGATTATTACAATATATTGAAAGTGAATAGAAACGCAACAGAGGATGATCTA 60
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGTTTGGATTATTACGATATATTGAAAGTGAATAGGAACGCAACAGAGGATGATCTA 60
Query 61 AAGAAATCTTATAGAAGATTGGCTATGAAATGGCATCCTGACAAAAACCCTAATACTAAA 120
||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 AAGAAATCTTACAGAAAATTGGCTATGAAATGGCATCCTGACAAAAACCCTAACACCAAA 120
Query 121 ACAGAAGCTGAAGCCAAGTTTAAACAGATCTCTGAGGCTTATGAGGC-AAGTCTTTCCA- 178
||||||||||||||||||||||| || |||||||||||||||||||| || | | |
Sbjct 121 ACAGAAGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGGCGAA--ATAT-GAG 177
Query 179 TTTTTCTTT-TTGTCTTGAGTGATCCGCAGAAGCGAGCGGTATATGATCAATACGGGGAA 237
| | ||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 GTAATGTTTCAGGTTTTGAGTGATCCGCAGAAGCGAGCGGTGTATGATCAATACGGGGAA 237
Query 238 GAAGGATTAAGCGATATGCCGCCTCCTGGGAGCATGGGAAACAATGGAAGAGCGGGCGGT 297
|||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||
Sbjct 238 GAAGGATTAAGCGATATGCCACCTCCCGGGAGCACGGGAAACAATGGAAGAGCGGGAGGT 297
Query 298 TTTAACCCGAGAAATGCAGAAGATATATTTGCAGAGTTCTTTGGAAGTAGTCCATTTGGG 357
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTAACCCTAGAAATGCGGAAGATATATTTGCAGAGTTCTTTGGAAGTAGTCCATTTGGA 357
Query 358 TTTGGATCAGCTGGTGGTCCTGGAAGGTCAATGAGGTTTCAATCAGACGGTGGAGGAGGA 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTTGGTTCAGCTGGTGGTCCTGGAAGGTCAATGAGGTTTCAATCAGACGGTGGAGGAGGA 417
Query 418 ATGTTTGGCGGATTTGGTGGCGGAAACAACGGAAGCGAAAACAATATATTCAGAACTTAC 477
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 418 ATGTTTGGCGGGTTTGGTGGTGGAAACAACGGTAGCGAAAACAATATATTCAGAACTTAC 477
Query 478 AGCGAAGGCACTCCTGCGCCTAAGAAACCTCCACCGGTTGAGAGCAAATTGCCTTGTAGC 537
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 AGTGAAGGCACTCCTGCGCCTAAGAAACCTCCACCGGTTGAGAGTAAATTGCCTTGTAGC 537
Query 538 CTTGAAGAGTTGTATTCTGGATCAACTAGGAAAATGAAGATCTCTAGATCCATTGTTGAC 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTGAAGAGTTGTATTCTGGATCAACTAGGAAAATGAAGATCTCTAGATCCATTGTTGAT 597
Query 598 GCTAACGGGAGACAGGCGCAAGAAACAGAGATTCTAACGATTGTTGTGAAACCGGGATGG 657
||||| |||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||
Sbjct 598 GCTAATGGGAGACAAGCGCAAGAGACAGAGATTTTGACGATTGTTGTGAAACCAGGATGG 657
Query 658 AAGAAAGGGACGAAGATCAAGTTTCCGGACAAAGGAAATGAGCAAGTGAATCAATTACCA 717
|| |||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 658 AAAAAAGGGACAAAGATAAAGTTTCCAGACAAAGGAAATGAGCAAGTGAATCAGTTACCA 717
Query 718 GCTGATTTAGTGTTTGTAATCGACGAGAAACCGCACGATTTGTTCAAGAGAGATGGGAAT 777
|||||||| ||||||||||| ||||||||||| || |||||||||| |||||||||||||
Sbjct 718 GCTGATTTGGTGTTTGTAATAGACGAGAAACCACATGATTTGTTCACGAGAGATGGGAAT 777
Query 778 GATCTCATCACAAGCCA-AAGAGTAACGCTAGCAGAAGCTATGGGAGGAACAACTGTGAA 836
|||||||||||||| || |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 778 GATCTCATCACAAG-CAGAAGAGTAACGCTTGCAGAAGCTATAGGAGGAACAACTGTGAA 836
Query 837 TATCAACACGCTCGATGGGCGGAATCTACCCGTTGGTGTCACGGAAATCGTAAGTCCCGG 896
||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 837 TATCAACACCCTCGATGGGCGGAATCTACCCGTTGGTGTCGCGGAAATCGTGAGTCCCGG 896
Query 897 GTATGAGTTTGTGGTTCCTGGAGAAGGGATGCCAATAGCTAAAGAACCAAGAAACAAAGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTATGAGTTTGTGGTTCCTGGAGAAGGGATGCCAATAGCTAAAGAACCAAGAAACAAAGG 956
Query 957 TGATCTTAAGATCAAATTCGATGTTCAGTTTCCCGCAAGATTGACAACAGAGCAGAAACC 1016
|||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 957 TGATCTTAAGATTAAGTTCGATGTTCAGTTTCCCGCAAGATTGACAACGGAGCAGAAATC 1016
Query 1017 CGCACTCAAGCGGGTCTTAGCAAGTTGA 1044
||| ||||||||||||||||| |||||
Sbjct 1017 CGCTCTCAAGCGGGTCTTAGCGGGTTGA 1044
> AT1G11040.1 | Symbols: | HSP40/DnaJ peptide-binding protein
| chr1:3679225-3680924 REVERSE LENGTH=1317
Length=1317
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 647 AACCGGGATGGAAGAAAGGGACGAAGATCA 676
||||||||||||||||||||||||||||||
Sbjct 908 AACCGGGATGGAAGAAAGGGACGAAGATCA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5