BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894470
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biot... 822 0.0
AT1G68420.1 | Symbols: | Class II aaRS and biotin synthetases ... 287 2e-76
AT5G38750.1 | Symbols: | asparaginyl-tRNA synthetase family | ... 89.8 6e-17
> AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr1:26762339-26764623
FORWARD LENGTH=1945
Length=1945
Score = 822 bits (445), Expect = 0.0
Identities = 972/1215 (80%), Gaps = 81/1215 (7%)
Strand=Plus/Plus
Query 102 AATCAGCGGGTGGGTTAAAACGGGAAGGGAGCAAGGAAAAGGGACTTTCGCTTTTCTTGA 161
|||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||| |||||
Sbjct 153 AATCGGTGGTTGGGTTAAAACCGGAAGACAGCAAGGGAAAGGGACTTTTGCTTTCCTTGA 212
Query 162 GGTGAACGATGGATCCTG-CGCAGCGAATCTTCAGGTCAAGGTGGATGCTTGTGTGTCA- 219
||| |||||||| || || | |||||||||| ||||| | ||| ||| | | | | | |
Sbjct 213 GGTTAACGATGGGTCTTGTC-CAGCGAATCTCCAGGTTATGGTTGATTCATCTCT-TTAT 270
Query 220 GATGTCTCCAAGTTGGTTGCGACGGGAACTTGTCTGACCGTTGATGGATG-TTTGAAGAT 278
||| |||| | |||||||||||| ||||||||| | || ||||||||| | |||||||||
Sbjct 271 GATCTCTCTAGGTTGGTTGCGACTGGAACTTGTGTTACTGTTGATGGA-GTTTTGAAGAT 329
Query 279 TCCTCCGGAAGGTAAAGCTACGAAGCAGAAG-ATTGAGCTTAGCGCCGAGAAGGTGATTG 337
||||||||||||||||| | ||||||| || ||||||||||||| |||| ||||||||
Sbjct 330 TCCTCCGGAAGGTAAAGGTTTGAAGCAG-AGTATTGAGCTTAGCGTTGAGACGGTGATTG 388
Query 338 ATGTGGGAACGGTGGATCCGGCTACGTACCCGATTCCTAAGACGAAGCTGACT-CTAGAG 396
|||||||| || |||||| ||||||| ||| |||||||||| ||| ||||| || |||
Sbjct 389 CGGTGGGAACTGTTGATCCGACTACGTATCCGCTTCCTAAGACTAAGTTGACTCCT-GAG 447
Query 397 CATT-TGAGAGACTATAC-TAATTTTCGTGCAAGGACCACCACGATGGCAGCAGTTACAA 454
|| | ||||| | | | | || ||||| | ||||| | | ||| |||||||| |||
Sbjct 448 -TTTCTCAGAGA-TGTGCTTCATCTTCGTTCTAGGACTAACTTGATCTCAGCAGTTGCAA 505
Query 455 GAATCCG--ACGTAAGATTACTCTTGAGGCTCA-CCTTTTCTGTGATGAACATGA-TAT- 509
||||||| ||| | || || ||| | | || |||| | | | |||||| | | |
Sbjct 506 GAATCCGTAACG--CGCTTGCTTTTGCGACGCATAGTTTT-TTTCAAGAACAT-AGTTTC 561
Query 510 CTGTCACATTCACACTCCTATCATCACAACAAGTGATTGCGAAGGTGCTGGTGAAATGTT 569
|| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 562 CT-TTACATTCACACTCCTATCATCACAACAAGTGATTGTGAAGGTGCTGGTGAAATGTT 620
Query 570 CCAAGTCACAACCTTGATCAACCA-A-TC------T-GA-C-G-A-CA-A--G-T--CGC 610
|||||| |||||||||||||| || | | | || | | | | | | | | |
Sbjct 621 CCAAGTGACAACCTTGATCAATCACACTGAGAGGGTTGAGCAGGATCTCATTGATAACCC 680
Query 611 -CCACC----GAGGCTGACATTGAAGCTGCCAAGCTCATTGTCAAGGAGAAAGGTGAAGC 665
||||| ||||||||| ||||||| |||| ||| ||||||||||||| |||||||||
Sbjct 681 TCCACCAACTGAGGCTGACGTTGAAGCGGCCAGGCTTATTGTCAAGGAGAGAGGTGAAGC 740
Query 666 TGTAGCGCAACTCAAAGCTGCCAAAGCAAGCAAGCAAGAGATTACGGCTTCCGTTGCTCA 725
||| |||||||| |||| |||||| || |||||| ||||||| || ||||||||||||||
Sbjct 741 TGTTGCGCAACTTAAAGTTGCCAAGGCGAGCAAGGAAGAGATCACTGCTTCCGTTGCTCA 800
Query 726 ACTCACTGAAGCAAAGGAGACTTTAGCT-ATGGTTGAAGAGAGGTCAAGGCTTAAGCCTG 784
||| | || |||||||| || ||||||| ||| |||||||||||| ||||||||||||||
Sbjct 801 ACTAAGTGTAGCAAAGGCGAGTTTAGCTCATG-TTGAAGAGAGGTTAAGGCTTAAGCCTG 859
Query 785 GATTACCTAAAAAGGATGGAAAAATTGATTATTCCCAA-GATTTCTTTG-CTCGTCAAGC 842
|| ||||||| || ||||| ||||||||||||||| || |||||||||| | ||||||||
Sbjct 860 GACTACCTAAGAATGATGGTAAAATTGATTATTCC-AATGATTTCTTTGGC-CGTCAAGC 917
Query 843 TTTCCTCACAGTTTCTGGTCAATTACACGCCGAAACCTATGCTTGCAG-TATGGGT-GAT 900
|||| | |||||||||||||| ||||| | || |||||||||||| | | | | |
Sbjct 918 TTTCTTGACAGTTTCTGGTCAGTTACAAGTGGAGACCTATGCTTGC-GCTCTTAGCAGC- 975
Query 901 GTGTATACATTTGGCCCCACTTTCCGGGCAGAGAAGTCTCACACCTCAAGGCATCTT-GC 959
|||||||||||||| |||||||| ||||||||||| |||||||| ||||||||| || ||
Sbjct 976 GTGTATACATTTGGTCCCACTTTTCGGGCAGAGAACTCTCACACTTCAAGGCAT-TTAGC 1034
Query 960 TGAGTTCTGGATGGTTGAGGTTGAA-TTAGCTTTTGCCGGTGTAGAGGAGG-CTATGAAC 1017
||||||||||||||||||| |||| || |||||||| | | || | || | | ||||||
Sbjct 1035 TGAGTTCTGGATGGTTGAGCCTGAAATT-GCTTTTGCAGATATACATGACGAC-ATGAAC 1092
Query 1018 TGCGCAGAGGCACT-TGTGAAAGACATTTGCAATTCGTTGCTTGA-AAAGTGTGATGATG 1075
|| |||||||| | ||||||| |||| ||||| | |||| | || ||| |||| ||||
Sbjct 1093 TGTGCAGAGGCG-TATGTGAAATACATGTGCAAATGGTTGATGGATAAA-TGTGGCGATG 1150
Query 1076 ACATGAAACTTATGGCTAAGAATGTCGACAAAGCCTGCATTGACAGGCTA--CTATTGGT 1133
||||| ||||||||| |||||| |||||| | | |||| | | |||||| | || |||
Sbjct 1151 ACATGGAACTTATGGATAAGAACGTCGACGAGGGATGCACTAAAAGGCTAAAC-AT-GGT 1208
Query 1134 TGCCTC-GACTGGGTTTG-GTCGAGTAACATACACCGAAGCAATA-ACGCTACTTGAGAA 1190
|||| | || | ||| | || ||||||||||| ||||||||| | || |||||||||
Sbjct 1209 TGCCAAAGCCTCG-TTTAAG-CGTGTAACATACACTGAAGCAATAGA-GCGACTTGAGAA 1265
Query 1191 AGCTGTGGCTCAAGGAAAGAAA-TTT--GAGAACCAAGTGGAGTGGGGAATCGACTTAGC 1247
|||||| |||||||||||| ||| || ||| |||||||||||||||||||||| ||
Sbjct 1266 AGCTGTAGCTCAAGGAAAGGTTGTTTTTGATAACAAAGTGGAGTGGGGAATCGACTTGGC 1325
Query 1248 ATCTGAGCATGAAAG 1262
|| |||||||||||
Sbjct 1326 CTCAGAGCATGAAAG 1340
> AT1G68420.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr1:25653893-25654156 FORWARD LENGTH=264
Length=264
Score = 287 bits (155), Expect = 2e-76
Identities = 207/231 (90%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 892 ATGGGTGATGTGTATACATTTGGCCCC-ACTTTCCGGGCAGAGAAGTCTCACACCTCAAG 950
||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1 ATGGGAGATGTGTATACATTT-GCCCCGACTTTCCGGGCAGAGAAGTCTCACACTTCAAG 59
Query 951 GCATCTTGCTGAGTTCTGGATGGTTGAGGTTGAATTAGCTTTTGCCGGTGTAGAGGAGGC 1010
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 GCATCTTGCTGAGTTTTGGATGGTTGAGGTTGAATTAGCTTTTGCCGGTGTAGAGGAAGC 119
Query 1011 TATGAACTGCGCAGAGGCACTTGTGAAAGACATTTGCA-ATTCGTTGCTTGAAAAGTGT- 1068
|||||||||| |||||||| ||||||||||||| |||| | |||||||||||||||||
Sbjct 120 TATGAACTGCTCAGAGGCAGTTGTGAAAGACATGTGCACAA-CGTTGCTTGAAAAGTGTC 178
Query 1069 GATGATGACATGAAACT-TATGGCTAAGAATGTCGACAAAGCCTGCATTGA 1118
| |||||||||| || | ||||| | |||| |||||| || ||| |||||
Sbjct 179 G-TGATGACATGGAA-TATATGGTTGAGAAGGTCGACGAATTCTGTATTGA 227
> AT5G38750.1 | Symbols: | asparaginyl-tRNA synthetase family
| chr5:15522650-15523180 FORWARD LENGTH=408
Length=408
Score = 89.8 bits (48), Expect = 6e-17
Identities = 66/74 (89%), Gaps = 3/74 (4%)
Strand=Plus/Plus
Query 128 GGGAGCAAGGAAAAGGGACTTTCGCTTTTCTTGAGGTGAACGATGGATCCTGCGCAGCGA 187
|||||| ||||||| | |||| |||||||||| |||||| ||||||||||||||||||
Sbjct 98 GGGAGCTAGGAAAA---AGTTTCACTTTTCTTGAAGTGAACTATGGATCCTGCGCAGCGA 154
Query 188 ATCTTCAGGTCAAG 201
||||||||||||||
Sbjct 155 ATCTTCAGGTCAAG 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5