BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894488 Length=312 Score E Sequences producing significant alignments: (Bits) Value AT5G25640.1 | Symbols: | Rhomboid-related intramembrane serine... 479 7e-135 AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein 1... 261 3e-69 > AT5G25640.1 | Symbols: | Rhomboid-related intramembrane serine protease family protein | chr5:8949849-8950331 REVERSE LENGTH=309 Length=309 Score = 479 bits (259), Expect = 7e-135 Identities = 295/312 (95%), Gaps = 3/312 (1%) Strand=Plus/Plus Query 1 ATGGGAATGGTTCTGTGGTTAACAGGAAAGATTGTTGAAGAAGAGAAAGGAAACTTTGGT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGGAATGGTTCTGTGGTTAACAGGAAAGATTGTTGAAGAAGAGAAAGGAAACTTTGGT 60 Query 61 TTGTGGTTGTCCTACTTGTTCACTGGTGTTGGAGCTAACCTGGTTTCTTGGTTCACTTTA 120 ||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 61 TTGTGGTTGTCTTACTTGTTTACTGGTGTTGGAGCTAACATGGTTTCTTGGTTCACTTTA 120 Query 121 CCGCCGAATTCAGTTTCTGCTGGAGCCTCGGGAGCTGTTTTCGGGTTATTTGTGATCAGT 180 ||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CCGCCAAATTCATTTTTTTCTGGAGCCTCGGGAGCTGTTTTCGGGTTATTTGTGATCAGT 180 Query 181 GTCCGTGTCAAGATGTCTCCGGGTTGGAGGAAATTTCTTGAATTTCTTATATTGGGTCAG 240 |||| |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| Sbjct 181 GTCCTTGTCAAGATGTCTCGGGGTTGGAGCAAATTTCTTGAAGTTCTTATATTGGGTCAG 240 Query 241 TTTGTTATGAAGAGGTGGTACATTGATTCTCACAGGTATTTGAAGCAGCTCAGACTTCAA 300 |||||||||||||||| | |||||||||||| |||||| |||||||| ||||||||||| Sbjct 241 TTTGTTATGAAGAGGT--T-CATTGATTCTCATAGGTATCTGAAGCAGTTCAGACTTCAA 297 Query 301 CTGGATTATTAG 312 |||||||||||| Sbjct 298 CTGGATTATTAG 309 > AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein 11 | chr5:8951264-8953396 REVERSE LENGTH=1155 Length=1155 Score = 261 bits (141), Expect = 3e-69 Identities = 208/238 (87%), Gaps = 14/238 (6%) Strand=Plus/Plus Query 25 GGAAAGATTGTTGAAGAAG-AGAAAGGAAACTTTGGTTTGTGGTTGTCCTACTTGTTCAC 83 |||||| |||||||||||| || |||||||||||||||||||| | |||||||||||||| Sbjct 506 GGAAAGCTTGTTGAAGAAGAAG-AAGGAAACTTTGGTTTGTGGCTCTCCTACTTGTTCAC 564 Query 84 TGGTGTTGGAGCTAACCTGGTTTCTTGGTTCACTTT-ACCGCCGAATT-CAGTTTCTGCT 141 |||||||||||||||||| ||||||||||| | ||| |||| ||| | | ||||||| | Sbjct 565 TGGTGTTGGAGCTAACCTTGTTTCTTGGTT-AGTTTTACCGA-GAAATGCTGTTTCTGTT 622 Query 142 GGAGCCTCGGGAGCTGTTTTCGGGTTATTTG-TGATCAGTGTCCGT-GTCAAGATGTCTC 199 || ||||||||||||||||| |||||||||| | |||||||||| | |||||||||||| Sbjct 623 GGTGCCTCGGGAGCTGTTTTTGGGTTATTTGCT-ATCAGTGTCC-TCGTCAAGATGTCTT 680 Query 200 CGGG-TTGGAGGAAATTTCTTGAATTTCTTATATTGGGTCAGTTTGTTAT-GAAGAGG 255 ||| |||||||||| | |||||| ||||||||||||||||||| ||||| || |||| Sbjct 681 -GGGATTGGAGGAAAATCCTTGAAGTTCTTATATTGGGTCAGTTCGTTATTGA-GAGG 736 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 14477111712 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5