BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894488
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25640.1 | Symbols: | Rhomboid-related intramembrane serine... 479 7e-135
AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein 1... 261 3e-69
> AT5G25640.1 | Symbols: | Rhomboid-related intramembrane serine
protease family protein | chr5:8949849-8950331 REVERSE LENGTH=309
Length=309
Score = 479 bits (259), Expect = 7e-135
Identities = 295/312 (95%), Gaps = 3/312 (1%)
Strand=Plus/Plus
Query 1 ATGGGAATGGTTCTGTGGTTAACAGGAAAGATTGTTGAAGAAGAGAAAGGAAACTTTGGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAATGGTTCTGTGGTTAACAGGAAAGATTGTTGAAGAAGAGAAAGGAAACTTTGGT 60
Query 61 TTGTGGTTGTCCTACTTGTTCACTGGTGTTGGAGCTAACCTGGTTTCTTGGTTCACTTTA 120
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 61 TTGTGGTTGTCTTACTTGTTTACTGGTGTTGGAGCTAACATGGTTTCTTGGTTCACTTTA 120
Query 121 CCGCCGAATTCAGTTTCTGCTGGAGCCTCGGGAGCTGTTTTCGGGTTATTTGTGATCAGT 180
||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGCCAAATTCATTTTTTTCTGGAGCCTCGGGAGCTGTTTTCGGGTTATTTGTGATCAGT 180
Query 181 GTCCGTGTCAAGATGTCTCCGGGTTGGAGGAAATTTCTTGAATTTCTTATATTGGGTCAG 240
|||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct 181 GTCCTTGTCAAGATGTCTCGGGGTTGGAGCAAATTTCTTGAAGTTCTTATATTGGGTCAG 240
Query 241 TTTGTTATGAAGAGGTGGTACATTGATTCTCACAGGTATTTGAAGCAGCTCAGACTTCAA 300
|||||||||||||||| | |||||||||||| |||||| |||||||| |||||||||||
Sbjct 241 TTTGTTATGAAGAGGT--T-CATTGATTCTCATAGGTATCTGAAGCAGTTCAGACTTCAA 297
Query 301 CTGGATTATTAG 312
||||||||||||
Sbjct 298 CTGGATTATTAG 309
> AT5G25752.1 | Symbols: ATRBL11, RBL11 | rhomboid-like protein
11 | chr5:8951264-8953396 REVERSE LENGTH=1155
Length=1155
Score = 261 bits (141), Expect = 3e-69
Identities = 208/238 (87%), Gaps = 14/238 (6%)
Strand=Plus/Plus
Query 25 GGAAAGATTGTTGAAGAAG-AGAAAGGAAACTTTGGTTTGTGGTTGTCCTACTTGTTCAC 83
|||||| |||||||||||| || |||||||||||||||||||| | ||||||||||||||
Sbjct 506 GGAAAGCTTGTTGAAGAAGAAG-AAGGAAACTTTGGTTTGTGGCTCTCCTACTTGTTCAC 564
Query 84 TGGTGTTGGAGCTAACCTGGTTTCTTGGTTCACTTT-ACCGCCGAATT-CAGTTTCTGCT 141
|||||||||||||||||| ||||||||||| | ||| |||| ||| | | ||||||| |
Sbjct 565 TGGTGTTGGAGCTAACCTTGTTTCTTGGTT-AGTTTTACCGA-GAAATGCTGTTTCTGTT 622
Query 142 GGAGCCTCGGGAGCTGTTTTCGGGTTATTTG-TGATCAGTGTCCGT-GTCAAGATGTCTC 199
|| ||||||||||||||||| |||||||||| | |||||||||| | ||||||||||||
Sbjct 623 GGTGCCTCGGGAGCTGTTTTTGGGTTATTTGCT-ATCAGTGTCC-TCGTCAAGATGTCTT 680
Query 200 CGGG-TTGGAGGAAATTTCTTGAATTTCTTATATTGGGTCAGTTTGTTAT-GAAGAGG 255
||| |||||||||| | |||||| ||||||||||||||||||| ||||| || ||||
Sbjct 681 -GGGATTGGAGGAAAATCCTTGAAGTTCTTATATTGGGTCAGTTCGTTATTGA-GAGG 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14477111712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5