BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894497

Length=474
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25760.1 | Symbols: PEX4, UBC21 | peroxin4 | chr5:8967655-89...   699    0.0  


> AT5G25760.1 | Symbols: PEX4, UBC21 | peroxin4 | chr5:8967655-8969349 
FORWARD LENGTH=745
Length=745

 Score =  699 bits (378),  Expect = 0.0
 Identities = 442/474 (93%), Gaps = 0/474 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGGCATCAAGAGCGAGACTCTTTAAAGAATACAAAGAGGTTCAGCGAGAGAAAGTA  60
            |||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct  96   ATGCAGGCATCAAGAGCGCGACTGTTTAAAGAATACAAAGAGGTACAGCGAGAGAAAGTA  155

Query  61   GCTGATCCAGATATTCAATTGGTGTGTGATGATACCAACATATTCAAATGGACCGCTCTT  120
            || ||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct  156  GCAGATCCTGATATTCAATTGATCTGTGACGATACCAACATATTCAAATGGACCGCTCTT  215

Query  121  ATCAAGGGACCGTCGGAGACTCCTTATGAAGGCGGTGTTTTTCAGCTTGCTTTTGCTGTT  180
            ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct  216  ATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTTTTCAGCTTGCTTTTTCTGTT  275

Query  181  CCTGAACCATATCCTTTGCAACCTCCTCAAGTGCGATTCTTGACCAAAATATTTCATCCA  240
            |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||| 
Sbjct  276  CCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCTTGACCAAGATATTCCATCCT  335

Query  241  AATGTGCATTTCAAGACAGGGGAAATTTGCCTCGACATATTGAAGAATGCGTGGAGTCCC  300
            ||||| |||||||||||||| ||||| || |||||||| ||||||||||| |||||||| 
Sbjct  336  AATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTTTGAAGAATGCTTGGAGTCCT  395

Query  301  GCTTGGACGCTTCAGTCCGTGTGTAGAGCTATCATAGCATTGATGGCTCATCCTGAGCCG  360
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  396  GCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCATTGATGGCTCATCCTGAGCCG  455

Query  361  GACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCTGGGGATGTGAGAGGGTTC  420
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  456  GACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCTGGTGATGTGAGAGGGTTC  515

Query  421  AATTCAATGGCACGCATGTACACGCGCCTCGCCGCAATGCCAAAGAAAGGATGA  474
            |||||||||||||  ||||| || ||||||||||| ||||| ||||||||||||
Sbjct  516  AATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGCCTAAGAAAGGATGA  569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22555132003


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5