BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894515
Length=444
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25890.1 | Symbols: IAA28, IAR2 | indole-3-acetic acid induc... 623 4e-178
> AT5G25890.1 | Symbols: IAA28, IAR2 | indole-3-acetic acid inducible
28 | chr5:9033415-9034834 FORWARD LENGTH=873
Length=873
Score = 623 bits (337), Expect = 4e-178
Identities = 381/402 (95%), Gaps = 4/402 (1%)
Strand=Plus/Plus
Query 45 GGTTGAGGTAGCTCCAGTGGTGGGATGGCCGCCGGTGAGATCATCCCGGCGGAACCTAAC 104
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 194 GGTTGAGGTAGCTCCAGTGGTGGGATGGCCGCCGGTGAGATCATCCCGGAGAAACCTAAC 253
Query 105 GGCGCAGCTAAAGgaggagatgaagaag-agagagagtgatgaagagaaagagTTGTACG 163
||| || ||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 254 GGCACAACTAAAGGAGGAGATGAAGAAGAAG-GAGAGTGATGAAGAGAAGGAATTGTACG 312
Query 164 TTAAGATCAACATGGAAGGAGTTCTC-ATAGGAAGAAAAGTCAACCTTTCAGCTTATAAC 222
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 313 TTAAGATCAACATGGAAGGAGTTC-CAATAGGAAGAAAAGTCAACCTTTCAGCTTATAAC 371
Query 223 AACTACCAACAGCTTTCACATGCCGTTGACCAACTCTTTTCTAAGAAAGATTCGTGGGAT 282
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 372 AACTACCAACAGCTTTCACATGCCGTTGACCAACTCTTCTCTAAGAAAGATTCGTGGGAT 431
Query 283 CTAAACAGACAATACACTTTGGTCTACGAAGACACTGAAGGAGATAAAGTTCTGGTCGGA 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CTAAACAGACAATACACTTTGGTCTACGAAGACACTGAAGGAGATAAAGTTCTGGTCGGG 491
Query 343 GATGTTCCTTGGGAGATGTTTGTATCGACCGTGAAGAGGTTACACGTTTTAAAAACCTCC 402
|||||||||||||||||||||||||| || || |||||||| || |||||||| ||||||
Sbjct 492 GATGTTCCTTGGGAGATGTTTGTATCTACTGTAAAGAGGTTGCATGTTTTAAAGACCTCC 551
Query 403 AACGCCTTCTCGCTCTCACCTAAAAAACATGGCAAGGAATAG 444
|||||||||| |||||||||| |||||||||||||||||||
Sbjct 552 CACGCCTTCTCACTCTCACCTAGAAAACATGGCAAGGAATAG 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21112454580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5