BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894517

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25900.1 | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3 | ...   226    6e-59


> AT5G25900.1 | Symbols: GA3, CYP701A3, ATKO1 | GA requiring 3 
| chr5:9036018-9038406 FORWARD LENGTH=1713
Length=1713

 Score =  226 bits (122),  Expect = 6e-59
 Identities = 145/156 (93%), Gaps = 1/156 (1%)
 Strand=Plus/Plus

Query  4     GCAATAAACATCTATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGAGTGG  63
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1271  GCAATAAACATATATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGACTGG  1330

Query  64    TGGCCAGAGCGGTTTCTTGATAATAGCAAATACGAATCGTCGGATCTTCACAAGACAATG  123
             ||||| ||||||||||||||| || ||||||| ||| |||| ||||||||||||||||||
Sbjct  1331  TGGCCGGAGCGGTTTCTTGATGATGGCAAATATGAAACGTCAGATCTTCACAAGACAATG  1390

Query  124   GCGTTCGGAGCGGGAAAAAGGGTT-GTGCTGGTGCT  158
             ||||| ||||||||||| |||||| |||||||||||
Sbjct  1391  GCGTTTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCT  1426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5