BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894518
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25930.1 | Symbols: | Protein kinase family protein with le... 1173 0.0
AT5G25910.1 | Symbols: AtRLP52, RLP52 | receptor like protein 5... 952 0.0
> AT5G25930.1 | Symbols: | Protein kinase family protein with
leucine-rich repeat domain | chr5:9050794-9054143 FORWARD LENGTH=3269
Length=3269
Score = 1173 bits (635), Expect = 0.0
Identities = 783/854 (92%), Gaps = 12/854 (1%)
Strand=Plus/Plus
Query 1 ATGACTCTTTTACCCTTACCCTTCCTCTTCTTCTTCCTCAAC-TCAATACCCTTATCCGT 59
||||||| |||||||||||| ||||| |||||||||||| || |||||||||||||| ||
Sbjct 87 ATGACTCGTTTACCCTTACCTTTCCTTTTCTTCTTCCTC-ACGTCAATACCCTTATCTGT 145
Query 60 CTTTTCACAGTCCAACGACCAGTCAACGCTCCTGAACCTAAAACGCGATCTCGGAGATCC 119
|||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 146 CTTTTCGCAGTTCAACGACCAGTCAACGCTTCTGAACCTGAAACGCGATCTCGGAGATCC 205
Query 120 ACCGTCTCTCCGGCTATGGAACGACACCTCTTCACCGTGCAATTGGTCGGAGATCATTTG 179
||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||| |||
Sbjct 206 ACCGTCTCTCCGGCTGTGGAACAACACATCTTCACCGTGCAACTGGTCGGAGATCACTTG 265
Query 180 CACCGCCGGAAATATCACTGGGATCAATTTCAAGAACAAGAACTTCACCGGGACAGTTCC 239
||||||||||||| |||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 266 CACCGCCGGAAATGTCACCGGGATCAATTTCAAGAACCAGAACTTCACTGGGACAGTTCC 325
Query 240 GACGACGATATGCGATTTGTCGAATCTCAATTTCCTCGATTTATCGTTTAATAACTTCGC 299
||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 326 AACGACGATATGCGATTTGTCGAATCTCAATTTCCTTGACTTATCGTTTAATTACTTCGC 385
Query 300 CGGCGAGTTTACGACGGTTCTTTACAAGTGCACGAAGCTTCAATATCTCGATCTCTCTCT 359
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 386 CGGCGAGTTTCCGACGGTTCTTTACAATTGCACGAAGCTTCAATATCTCGATCTCTCTCA 445
Query 360 GAACGTTTTCAACGGCTCACTTCCCGTCGACATCGACCGTCTCTCACCGGAACTTGACTA 419
|||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 446 GAACCTTCTCAACGGCTCACTTCCCGTCGACATCGACCGTCTCTCACCGGAACTCGACTA 505
Query 420 TCTCGACTTAGCAGCTAACG-ACTTCGCCGGAGATATCCCTAAGAA-TATCGGACATATC 477
|||||||||||| ||||||| | ||| |||| ||||||||||| || | |||||| |||
Sbjct 506 TCTCGACTTAGCTGCTAACGGA-TTCTCCGGCGATATCCCTAA-AAGTCTCGGACGGATC 563
Query 478 TCGAAACTCAAGGTATTGAATCTGTACCAGAGCGAATACGACGGAACGTTTCCGTCGGAG 537
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 564 TCGAAGCTCAAGGTATTGAATCTGTACCAGAGCGAATACGACGGTACGTTTCCATCGGAG 623
Query 538 ATCGGAGACTTGGTCG-AGCTTGAAGAACTTCGATTAGCGTTAAACGATAAGTTTACGCC 596
||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 624 ATCGGAGACTTA-TCGGAGCTTGAAGAACTTCGACTAGCGTTAAACGATAAGTTTACTCC 682
Query 597 GGCGAAGCTCCCGACGGAGTTTCGGAAATTGAAGAAACTGAAGTATATGTGGTTA-ACGG 655
||| ||| | |||| |||||| |||| ||||||||||| ||||||||||||||| | ||
Sbjct 683 GGCTAAGATTCCGATAGAGTTTGGGAAGTTGAAGAAACTCAAGTATATGTGGTTAGA-GG 741
Query 656 AGATGAATTTGATCGGAGAAATCTCAGCCGTTGTTTTCGAGAACATGACGGGTCTTAAAC 715
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| | |
Sbjct 742 AGATGAATTTGATCGGAGAAATCTCACCCGTTGTTTTCGAAAACATGACGGATCTTGAGC 801
Query 716 ACGTTGACTTATCGGGCAACAATTTAACGGGTCGGATCCCAGATGTTTTATTCGGGTTGA 775
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 802 ACGTTGACTTATCGGTCAATAACTTAACGGGTCGGATCCCAGATGTTTTATTCGGGTTGA 861
Query 776 AGAATCTCACTAA-TCTTTATCTCTACGCTAATGACTTAACCGGAGAAATCCCCAAATCA 834
|||||||||| | | ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 862 AGAATCTCACCGAGT-TTTATCTCTTCGCTAATGGCTTAACCGGAGAAATCCCCAAATCA 920
Query 835 ATTTCGGCGACGAA 848
||||||||||||||
Sbjct 921 ATTTCGGCGACGAA 934
> AT5G25910.1 | Symbols: AtRLP52, RLP52 | receptor like protein
52 | chr5:9038860-9041377 FORWARD LENGTH=2436
Length=2436
Score = 952 bits (515), Expect = 0.0
Identities = 744/855 (87%), Gaps = 14/855 (2%)
Strand=Plus/Plus
Query 1 ATGACTCTTTTACCCTTACCCTTCCTCTTCTTCTTCCTCAAC-TCAATACCCTTAT-CCG 58
|||||| |||||||||||| ||| |||||||||||||| || ||||||||||| | |||
Sbjct 1 ATGACTTTTTTACCCTTACTTTTCATCTTCTTCTTCCTC-ACATCAATACCCTT-TCCCG 58
Query 59 TCTTTTCACAGTCCAACGACCAGTCAACGCTCCTGAACCTAAAACGCGATCTCGGAGATC 118
|||||| |||| |||||||| ||||||||| || ||||| |||||||||||||| || |
Sbjct 59 CCTTTTCCCAGTACAACGACCGGTCAACGCTGCTAAACCTGAAACGCGATCTCGGCGACC 118
Query 119 CACCGTCTCTCCGGCTATGGAACGACACCTCTTCACCGTGCAATTGGTCGGA-GATCATT 177
|| |||||||||||||||||||||||| |||||||||||||||||| | | ||| |
Sbjct 119 CATTGTCTCTCCGGCTATGGAACGACACATCTTCACCGTGCAATTGG-CCAAGGATTACC 177
Query 178 TGCACCGCCGGAAATATCACTGGGATCAATTTCAAGAACAAGAACTTCACCGGGACAGTT 237
|||||||||||||| |||| | ||| || ||| ||||| ||||||||||||||||||||
Sbjct 178 TGCACCGCCGGAAACGTCACCGAGATAAACTTCCAGAACCAGAACTTCACCGGGACAGTT 237
Query 238 CCGACGACGATATGCGATTTGTCGAATCTCAATTTCCTCGATTTATCGTTTAATAACTTC 297
|| |||||||| ||| | || |||||||||| | ||| |||| ||||||||| |||||
Sbjct 238 CCAACGACGATTTGCAACTTCCCGAATCTCAAATCCCTAAATTTGTCGTTTAATTACTTC 297
Query 298 GCCGGCGAGTTTACGACGGTTCTTTACAAGTGCACGAAGCTTCAATATCTCGATCTCTCT 357
||||| |||||| | |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 298 GCCGGTGAGTTTCCAACGGTTCTTTACAATTGCACGAAGCTTCAATACCTCGATCTCTCT 357
Query 358 CTGAACGTTTTCAACGGCTCACTTCCCGTCGACATCGACCGTCTCTCACCGGAACTTGAC 417
| |||| | ||||||||||||||||||| ||||||| |||||||| |||| ||||| |
Sbjct 358 CAGAACCTATTCAACGGCTCACTTCCCGACGACATCAACCGTCTCGCACCTAAACTTAAG 417
Query 418 TATCTCGACT-TAGCAGCTAACGACTTCGCCGGAGATATCCCTAAGAATATCGGACATAT 476
|||||||| | | || |||||| ||| |||||||||||||| || || ||||||| ||
Sbjct 418 TATCTCGA-TCTCGCGGCTAACTCCTTTGCCGGAGATATCCCAAAAAACATCGGACGGAT 476
Query 477 CTCGAAACTCAAGGTATTGAATCTGTACCA-GAGCGAATACGACGGAACGTTTCCGTCGG 535
|||||| ||||||||||| || || || || ||||||||||||||| |||||||| ||||
Sbjct 477 CTCGAAGCTCAAGGTATTAAACCTCTA-CATGAGCGAATACGACGGTACGTTTCCATCGG 535
Query 536 AGATCGGAGACTTGGTC-GAGCTTGAAGAACTTCGATTAGCGTTAAACGATAAGTTTACG 594
||||||||||||| || |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 536 AGATCGGAGACTT-ATCGGAGCTTGAAGAACTTCAATTAGCTTTAAACGATAAGTTTACG 594
Query 595 CCGGCGAAGCTCCCGACGGAGTTTCGGAAATTGAAGAAACTGAAGTATATGTGGTTA-AC 653
|||| |||||| || ||||||||| ||||| |||||||| ||||||| ||||||||| |
Sbjct 595 CCGGTGAAGCTTCCAACGGAGTTTGGGAAACTGAAGAAATTGAAGTACATGTGGTTAGA- 653
Query 654 GGAGATGAATTTGATCGGAGAAATCTCAGCCGTTGTTTTCGAGAACATGACGGGTCTTAA 713
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 654 GGAGATGAATCTGATCGGAGAAATCTCAGCCGTTGTTTTCGAGAACATGACGGATCTTAA 713
Query 714 ACACGTTGACTTATCGGGCAACAATTTAACGGGTCGGATCCCAGATGTTTTATTCGGGTT 773
|||||| |||||||||| |||||||||||||||||||||||| || |||||||||||| |
Sbjct 714 ACACGTAGACTTATCGGTCAACAATTTAACGGGTCGGATCCCTGACGTTTTATTCGGGCT 773
Query 774 GAAGAATCTCACTAATCTTTATCTCTACGCTAATGACTTAACCGGAGAAATCCCCAAATC 833
|||||||||||| | |||||||||| || ||||||||||||||||||||||| |||||
Sbjct 774 GAAGAATCTCACCGAGCTTTATCTCTTTGCAAATGACTTAACCGGAGAAATCCCGAAATC 833
Query 834 AATTTCGGCGACGAA 848
||||||||||| |||
Sbjct 834 AATTTCGGCGAAGAA 848
Score = 100 bits (54), Expect = 2e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 853 GCTCCAACAACAATTTCACTGGAAAGATTCCATCTTTCATATGTGCGTTGCGCTCTCTAA 912
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1274 GCTCCAACAACAATTTCACTGGAAAGATTCCATCTTTCATATGTGAGTTGCACTCTCTAA 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44557688389
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5