BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894539

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26140.1 | Symbols: LOG9, ATLOG9 | Putative lysine decarboxy...   534    3e-151
  AT5G11950.1 | Symbols:  | Putative lysine decarboxylase family ...   148    5e-35 


> AT5G26140.1 | Symbols: LOG9, ATLOG9 | Putative lysine decarboxylase 
family protein | chr5:9130796-9131636 FORWARD LENGTH=432
Length=432

 Score =  534 bits (289),  Expect = 3e-151
 Identities = 401/451 (89%), Gaps = 23/451 (5%)
 Strand=Plus/Plus

Query  166  ATGCCTATTGAG---ATATCTGGTGAGACTGTTGGAGATGTAAGAATTGTTGCAGACATG  222
            |||| |||||||   ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  1    ATGCATATTGAGCACATATCTGGTGAGACTGTTGGAGAGGTAAGAATTGTTTCAGACATG  60

Query  223  CACGAGCGCAAAGCTGCAATGGCTCAAGAAGCTGAGGCTTTCATTGCGCTCCCT-GGCGA  281
            ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct  61   CACGAGCGCAAAGCTACAATGGCTCAAGAAGCTGGGGCTTTCATTGCGCT-CCTAGGCGA  119

Query  282  GTTTTCTAATTCCAAAGATTCTAGCAAGTTTTTAAAAGAACTACTGGAGATGATAACATG  341
            |     | | |   || |  ||    |     |  | |||||||||||||||||||||||
Sbjct  120  G--AGGT-A-T--GAA-A--CT----A-----TGGAGGAACTACTGGAGATGATAACATG  161

Query  342  GGCACAGCTTGGTATTCATAAGAAGACGGTTGGTCTTTTGAATGCTGATGGTTACTATAA  401
            ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct  162  GGCACAGCTTGGTATCCATAAGAAGACGGTTGGTCTTTTGAATGTTGATGGTTACTATAA  221

Query  402  CAATTTACTTGCTTTGTTTGACACTGGAGTTGAAGAAGGTTTTATTAAGCCAGGCGCTCG  461
            |||||| |||||||| |||||||||||||||||||||||||||||||| | ||| ||| |
Sbjct  222  CAATTTGCTTGCTTTCTTTGACACTGGAGTTGAAGAAGGTTTTATTAAACAAGGTGCTTG  281

Query  462  TAATATCGTTGTTTCTGCTCCATCGGCTAGAGAACTTATGGAGAAGATGGAGCTATATAC  521
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  282  TAATATCGTTGTTTCCGCGCCATCGGCTAGAGAACTTATGGAGAAGATGGAGCTATATAC  341

Query  522  TCCTTCACACAAGCACATTGCTTCTCACCAAAGCTGGAAAGTTGAACAACTTGGAGATTA  581
            ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  342  TCCTTCACACAAGTACATTGCTTCTCACCAAAGCTGGAAAGTTGAACCACTTGGAGATTA  401

Query  582  CCCACTAATAAATCAGAACAGGCCTCAATGA  612
            ||||||| ||||| |||||| ||||||||||
Sbjct  402  CCCACTACTAAATGAGAACAAGCCTCAATGA  432


> AT5G11950.1 | Symbols:  | Putative lysine decarboxylase family 
protein | chr5:3854968-3856983 FORWARD LENGTH=923
Length=923

 Score =  148 bits (80),  Expect = 5e-35
 Identities = 100/110 (91%), Gaps = 0/110 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGAAAATCAGAGAACCAAATTCAGTAAAATCTGTGTTTTTTGCGGAAGTCACTCT  60
            ||||| || |||||| ||| || |||||| ||||||||||| ||||||||||| ||||||
Sbjct  105  ATGGAAGATAATCAGCGAAGCAGATTCAGAAAAATCTGTGTCTTTTGCGGAAGCCACTCT  164

Query  61   GGTCACAGAGAAGTTTTCAGTGATGCTGCAATCGAACTTGGCAATGAACT  110
            ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  165  GGTCACAGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACT  214



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5