BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg894540 Length=2124 Score E Sequences producing significant alignments: (Bits) Value AT5G26150.1 | Symbols: | protein kinase family protein | chr5:... 3199 0.0 AT5G26146.1 | Symbols: | other RNA | chr5:9135913-9138264 FORW... 592 6e-168 > AT5G26150.1 | Symbols: | protein kinase family protein | chr5:9137461-9140099 REVERSE LENGTH=2112 Length=2112 Score = 3199 bits (1732), Expect = 0.0 Identities = 1978/2096 (94%), Gaps = 19/2096 (1%) Strand=Plus/Plus Query 1 ATGGCTTCACCGTACTCGTCAGACGATATCCATTCTCCGGTGAACTCGACGGTGGTTGCA 60 |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| Sbjct 1 ATGGCTTCACCGTACTCGTCCGACGATATCCATTCTCCGGTGAACTCAACGGTCGTTGCA 60 Query 61 ATAGACAAAGA-AAAGCATAG-TCATTACGCTGTTCGTTGGGCGGTCGACCATCTCCTCA 118 ||||||||||| ||| ||||| || |||||||||||||||||| |||||||||||||||| Sbjct 61 ATAGACAAAGAGAAA-CATAGTTC-TTACGCTGTTCGTTGGGCCGTCGACCATCTCCTCA 118 Query 119 ATATGATTCACAAACCAGTCATGATTCTTGTCCATGTTCGTTCCAAAAACTCAAACCATG 178 ||||||||||||| || |||||||||||||||||||||||| ||||||| |||||||||| Sbjct 119 ATATGATTCACAATCCCGTCATGATTCTTGTCCATGTTCGTACCAAAAATTCAAACCATG 178 Query 179 GAGCCAATTTGAATAATGATGATCTAAATCAGCTTTTTATTCCATATCGAGGATATTGTG 238 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GAGCCAACTTGAACAATGATGATCTAAATCAGCTTTTTATTCCATATCGAGGATATTGTG 238 Query 239 CGCGAAAAGGGGTTGTTCTTGACGATTCGGATGTGGCAAAAGCAATATTGGATTACATTA 298 ||||||||||||||||||| |||||||| || || |||||| |||| ||||||||| ||| Sbjct 239 CGCGAAAAGGGGTTGTTCTAGACGATTCCGACGTAGCAAAAACAATCTTGGATTACGTTA 298 Query 299 ATAACAACCTGGTTAACAATCTTGTAATGGGAGCATCCTCGAAGAACAGCTTCGCTAGGT 358 |||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| Sbjct 299 ATAACAACCTGGTTAACAATCTTGTATTGGGAGCATCCACGAAGAACACCTTCGCTAGGT 358 Query 359 CTTTTATGTTTAGTAAACCACATGAGGTGCAATCTAGCATAATGAAATCGACGCCTGATT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CTTTTATGTTTAGTAAACCACATGAGGTGCAATCTAGCATAATGAAATCGACGCCTGATT 418 Query 419 TTTGTTCCGTGTATGTCATTTCTAAAGGAGGAAAAGTTCAATCTTCCCGACCAGCACAAA 478 ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 419 TTTGTTCGGTGTATGTCATTTCTAAAGGAGGGAAAGTTCAGTCTTCCCGACCAGCTCAAA 478 Query 479 GACCTATCACCAATACGCTTGCCCCGCCTCGTGTTCCGTCATCTGGCTTTTTAATCCAAT 538 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 479 GACCTATCACCAATACGCTTGCCCCGCCTCGTGTTCCATCCTCTGGCTTTTTAATCCAAT 538 Query 539 CTTTATCGGATAGCGAGCAAGATCTTATACCTAGGGTCCAGCGTAGTGCAAGGAACAAAC 598 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 539 CTTTATCCGATAGCGAGCAAGATCTCATACCTAGGGTCCAGCGTAGTGCAAGGAACAAAC 598 Query 599 CTAATGAGACTACTTATCCGCATAATCGT---GCCTTCAACACAACGCAAAAAAGTTACA 655 ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| Sbjct 599 CTAATGAGACTACTTATCCGCATAATCGTGCCGCCTTCAACACGACGCAAAAAGGTTACA 658 Query 656 AAAACACTATAAATGGGTCGATGGATTTAAACAACGGCTTTAACCAAGTTGCCTTCCAAA 715 ||| | |||||||||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 659 AAAGCCCTATAAATGGGTCGATGGATTTCAACAACGGCTTTAATCAAGCTGCCTTCCAAA 718 Query 716 GAAATCCAACGTTACAAAGTTCATTTTCTGATGAATCTGAAGTTGGATTAGGCA-TGATG 774 ||||||| |||||||||||||| ||||||||||||||||| | ||| || || | ||||| Sbjct 719 GAAATCCCACGTTACAAAGTTCGTTTTCTGATGAATCTGATGGTGGGTTTGG-AGTGATG 777 Query 775 GGTTCCA-TTGATCTCTCTGCTCATAATAATATGGATTTTTATCATGGTGCATCGAGTTC 833 |||| || ||||||||||| |||| |||| |||||||||||||||||||||||||||||| Sbjct 778 GGTT-CAGTTGATCTCTCTTCTCAAAATAGTATGGATTTTTATCATGGTGCATCGAGTTC 836 Query 834 TTCAGAAGAGTCGATTCCACAATCAACTAAAGATATTGAAGCTGAAATGAGAAGGCTAAA 893 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 837 TTCAGAAGAGTCAATTCCACAATCAACTAAAGATATTGAAGCTGAGATGAGAAGGCTAAA 896 Query 894 GCTTGAGCTTAAGCAAACTATGGACATGTATAGCTCAGCTTGTAAAGAAGCACTTACGGC 953 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 GCTTGAACTTAAGCAAACTATGGACATGTATAGCTCAGCTTGTAAAGAAGCACTTACGGC 956 Query 954 AAAAAGAAAGGCAAACGAGCTAAATCAGTGGAAAATAGAAGAAGCTCG-AAAGTTCGAGA 1012 ||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||| Sbjct 957 AAAAAGAAAGGCAAACGAGCTAAATCAATGGAAGATAGAAGAAGCTCGTAAA-TTCGAGA 1015 Query 1013 AAGCGAGGCTTTCTGAAGAAGCAGCATTGGCAGTTGCGGAAATGGAGAAGGCAAAGTGTA 1072 ||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 1016 AAGCGAGGCTTTCTGAAGAAGCAGCATTGGCAGTTGCTGAAATCGAGAAAGCAAAGTGTA 1075 Query 1073 GAACAGCAGAAGAAGCAGCTGAGAAAGCTCAGAGAATGGCTGAGCTAGAAGGACAAAGAA 1132 ||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1076 GAACAGCCGTAGAAGCAGCTGAGAAAGCTCAAAGAATGGCTGAACTAGAAGGACAAAGAA 1135 Query 1133 GGAAGCAAGCGGAGATGAAAGC-GATAAGTGAAGAAAAGGATAAAGACCGCGCAGTGAGT 1191 |||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||| Sbjct 1136 GGAAGCAAGCAGAGATGAAAGCTG-TAAGTGAAGAAAAGGACAAAGACCGCGCAGTGAGT 1194 Query 1192 GCTTTGGCACATAACGATGTTCGCTACAGAAAATATACG-ATAGAAGAGATCGAAGAAGC 1250 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1195 GCTTTGGCACATAACGATGTTCGCTACAGAAAATATA-GTATAGAAGAGATCGAAGAAGC 1253 Query 1251 CACAGAACAG-TTTGCAAATCATAGGAAGATTGGTGAAGGAGGATATGGACCGGTGTATA 1309 ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1254 TACAGAG-AGGTTTGCAAATCATAGGAAGATTGGTGAAGGAGGATATGGACCTGTGTACA 1312 Query 1310 ATGGCGAACTTGACCACACTCCTGTTGCCATTAAAGTTTTAAGACCTGATGCTGCTCAAG 1369 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1313 ATGGTGAACTTGACCACACTCCTGTTGCCATTAAAGTTTTAAGACCTGATGCTGCTCAAG 1372 Query 1370 GaaaaaaaCAATTTCAACAAGAAGTTGAGGTTTTAAGTTCCATAAGGCATCCTCATATGG 1429 |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| Sbjct 1373 GAAAAAAACAATTTCAACAAGAAGTTGAGGTTCTATGTTCCATAAGGCATCCTCACATGG 1432 Query 1430 TTCTTCTCCTTGGTGCATGTCCAGAATATGGATGTTTGGTTTATGAGTTCATGGAAAATG 1489 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1433 TTCTTCTCCTTGGTGCATGTCCTGAATATGGATGTTTGGTTTACGAGTTCATGGAAAATG 1492 Query 1490 GGAGCTTAGAGGATAGACTCTTCCGTAGAGGAAACTCTCCACCGCTTTCGTGGAGGAAAC 1549 ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| Sbjct 1493 GGAGCTTAGAGGATAGACTTTTTCGTACTGGAAACTCTCCACCGCTTTCGTGGAGGAAAC 1552 Query 1550 GTTTTGAAATAGCCGCGGAGATTGCTACTGCCCTCTCATTCCTTCATCAAGCTAAGCCAG 1609 ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1553 GTTTTGAAATAGCGGCGGAGATTGCTACCGCACTCTCATTCCTTCATCAAGCTAAGCCAG 1612 Query 1610 AACCTTTAGTTCACCGCGACCTTAAACCAGCCAATATACTCTTAGACAGAAACTATGTGA 1669 |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||| Sbjct 1613 AACCTTTAGTTCACCGCGACCTAAAACCAGCCAATATACTCTTAGACAAAAACTACGTGA 1672 Query 1670 GCAAGATCAGCGACGTTGGTTTAGCGCGGTTAGTCCCAGCATCGGTAGCTAATAGCGTTA 1729 ||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| | Sbjct 1673 GCAAGATCAGCGACGTTGGTTTAGCGCGGTTAGTCCCCGCATCGATAGCTGATAGCGTCA 1732 Query 1730 CACAATACCACATGACATCCGCGGCAGGAACGTTTTGTTACATAGACCCTGAATACCAAC 1789 | |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1733 CGCAATTCCACATGACATCTGCGGCAGGAACGTTTTGTTACATAGACCCTGAATACCAAC 1792 Query 1790 AAACAGGAATGTTAACCACAAAGTCAGACGTATACTCATTTGGGATATTGCTACTTCAGA 1849 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1793 AAACAGGAATGTTAACCACAAAATCAGACGTATACTCATTGGGGATATTGCTACTTCAGA 1852 Query 1850 TCATAACCGCAAGGCCTCCCATGGGGCTGGCTCACCAAGTCTCGAGGGCAATTAGTAAAG 1909 | ||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1853 TTATAACCGGAAGGCCTCCCATGGGGCTGGCTCACCAAGTTTCAAGGGCAATTAGTAAAG 1912 Query 1910 GAACTTTCAAGGAAATGCTTGACCCCGTCGTGCATGATTGGCCTTTACAAGAGGCTCAAT 1969 |||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| Sbjct 1913 GAACTTTCAAGGAAATGCTTGACCCCGTTGTGCCTGATTGGCCTGTACAAGAGGCTCAAT 1972 Query 1970 CTTTTGCTACTCTATCGTTGAAATGCGCGGAGCTAAGAAAAAGAGATAGACCCGATCTTG 2029 |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 1973 CTTTTGCTACTCTAGCGTTGAAATGTGCGGAGCTAAGAAAAAGAGATAGACCAGATCTTG 2032 Query 2030 GAAAGGAAGTAGTCCCACATCTTATTAGATTAAAAAACTTTGGGAATGATGTTGAT 2085 | ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2033 GGAAGGAAGTAGTCCCACATCTTATTAGATTAAAAAACTTTGGGAATGATGGTGAT 2088 > AT5G26146.1 | Symbols: | other RNA | chr5:9135913-9138264 FORWARD LENGTH=703 Length=703 Score = 592 bits (320), Expect = 6e-168 Identities = 364/386 (94%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 1393 GTTGAGGTTTTAAGTTCCATAAGGCATCCTCATATGGTTCTTCTCCTTGGTGCATGTCCA 1452 ||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 616 GTTGAGGTTCTATGTTCCATAAGGCATCCTCACATGGTTCTTCTCCTTGGTGCATGTCCT 557 Query 1453 GAATATGGATGTTTGGTTTATGAGTTCATGGAAAATGGGAGCTTAGAGGATAGACTCTTC 1512 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 556 GAATATGGATGTTTGGTTTACGAGTTCATGGAAAATGGGAGCTTAGAGGATAGACTTTTT 497 Query 1513 CGTAGAGGAAACTCTCCACCGCTTTCGTGGAGGAAACGTTTTGAAATAGCCGCGGAGATT 1572 |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 496 CGTACTGGAAACTCTCCACCGCTTTCGTGGAGGAAACGTTTTGAAATAGCGGCGGAGATT 437 Query 1573 GCTACTGCCCTCTCATTCCTTCATCAAGCTAAGCCAGAACCTTTAGTTCACCGCGACCTT 1632 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 GCTACCGCACTCTCATTCCTTCATCAAGCTAAGCCAGAACCTTTAGTTCACCGCGACCTA 377 Query 1633 AAACCAGCCAATATACTCTTAGACAGAAACTATGTGAGCAAGATCAGCGACGTTGGTTTA 1692 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 376 AAACCAGCCAATATACTCTTAGACAAAAACTACGTGAGCAAGATCAGCGACGTTGGTTTA 317 Query 1693 GCGCGGTTAGTCCCAGCATCGGTAGCTAATAGCGTTACACAATACCACATGACATCCGCG 1752 |||||||||||||| |||||| ||||| ||||||| || |||| |||||||||||| ||| Sbjct 316 GCGCGGTTAGTCCCCGCATCGATAGCTGATAGCGTCACGCAATTCCACATGACATCTGCG 257 Query 1753 GCAGGAACGTTTTGTTACATAGACCC 1778 |||||||||||||||||||||||||| Sbjct 256 GCAGGAACGTTTTGTTACATAGACCC 231 Score = 224 bits (121), Expect = 3e-57 Identities = 137/145 (94%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 1884 CCAAGTCTCGAGGGCAATTAGTAAAGGAACTTTCAAGGAAATGCTTGACCCCGTCGTGCA 1943 |||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 232 CCAAGTTTCAAGGGCAATTAGTAAAGGAACTTTCAAGGAAATGCTTGACCCCGTTGTGCC 173 Query 1944 TGATTGGCCTTTACAAGAGGCTCAATCTTTTGCTACTCTATCGTTGAAATGCGCGGAGCT 2003 |||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 172 TGATTGGCCTGTACAAGAGGCTCAATCTTTTGCTACTCTAGCGTTGAAATGTGCGGAGCT 113 Query 2004 AAGAAAAAGAGATAGACCCGATCTT 2028 |||||||||||||||||| |||||| Sbjct 112 AAGAAAAAGAGATAGACCAGATCTT 88 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105320743410 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5