BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894540
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26150.1 | Symbols: | protein kinase family protein | chr5:... 3199 0.0
AT5G26146.1 | Symbols: | other RNA | chr5:9135913-9138264 FORW... 592 6e-168
> AT5G26150.1 | Symbols: | protein kinase family protein | chr5:9137461-9140099
REVERSE LENGTH=2112
Length=2112
Score = 3199 bits (1732), Expect = 0.0
Identities = 1978/2096 (94%), Gaps = 19/2096 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCACCGTACTCGTCAGACGATATCCATTCTCCGGTGAACTCGACGGTGGTTGCA 60
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1 ATGGCTTCACCGTACTCGTCCGACGATATCCATTCTCCGGTGAACTCAACGGTCGTTGCA 60
Query 61 ATAGACAAAGA-AAAGCATAG-TCATTACGCTGTTCGTTGGGCGGTCGACCATCTCCTCA 118
||||||||||| ||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 61 ATAGACAAAGAGAAA-CATAGTTC-TTACGCTGTTCGTTGGGCCGTCGACCATCTCCTCA 118
Query 119 ATATGATTCACAAACCAGTCATGATTCTTGTCCATGTTCGTTCCAAAAACTCAAACCATG 178
||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 119 ATATGATTCACAATCCCGTCATGATTCTTGTCCATGTTCGTACCAAAAATTCAAACCATG 178
Query 179 GAGCCAATTTGAATAATGATGATCTAAATCAGCTTTTTATTCCATATCGAGGATATTGTG 238
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAGCCAACTTGAACAATGATGATCTAAATCAGCTTTTTATTCCATATCGAGGATATTGTG 238
Query 239 CGCGAAAAGGGGTTGTTCTTGACGATTCGGATGTGGCAAAAGCAATATTGGATTACATTA 298
||||||||||||||||||| |||||||| || || |||||| |||| ||||||||| |||
Sbjct 239 CGCGAAAAGGGGTTGTTCTAGACGATTCCGACGTAGCAAAAACAATCTTGGATTACGTTA 298
Query 299 ATAACAACCTGGTTAACAATCTTGTAATGGGAGCATCCTCGAAGAACAGCTTCGCTAGGT 358
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 299 ATAACAACCTGGTTAACAATCTTGTATTGGGAGCATCCACGAAGAACACCTTCGCTAGGT 358
Query 359 CTTTTATGTTTAGTAAACCACATGAGGTGCAATCTAGCATAATGAAATCGACGCCTGATT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTTTTATGTTTAGTAAACCACATGAGGTGCAATCTAGCATAATGAAATCGACGCCTGATT 418
Query 419 TTTGTTCCGTGTATGTCATTTCTAAAGGAGGAAAAGTTCAATCTTCCCGACCAGCACAAA 478
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 419 TTTGTTCGGTGTATGTCATTTCTAAAGGAGGGAAAGTTCAGTCTTCCCGACCAGCTCAAA 478
Query 479 GACCTATCACCAATACGCTTGCCCCGCCTCGTGTTCCGTCATCTGGCTTTTTAATCCAAT 538
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 479 GACCTATCACCAATACGCTTGCCCCGCCTCGTGTTCCATCCTCTGGCTTTTTAATCCAAT 538
Query 539 CTTTATCGGATAGCGAGCAAGATCTTATACCTAGGGTCCAGCGTAGTGCAAGGAACAAAC 598
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 CTTTATCCGATAGCGAGCAAGATCTCATACCTAGGGTCCAGCGTAGTGCAAGGAACAAAC 598
Query 599 CTAATGAGACTACTTATCCGCATAATCGT---GCCTTCAACACAACGCAAAAAAGTTACA 655
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 599 CTAATGAGACTACTTATCCGCATAATCGTGCCGCCTTCAACACGACGCAAAAAGGTTACA 658
Query 656 AAAACACTATAAATGGGTCGATGGATTTAAACAACGGCTTTAACCAAGTTGCCTTCCAAA 715
||| | |||||||||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 659 AAAGCCCTATAAATGGGTCGATGGATTTCAACAACGGCTTTAATCAAGCTGCCTTCCAAA 718
Query 716 GAAATCCAACGTTACAAAGTTCATTTTCTGATGAATCTGAAGTTGGATTAGGCA-TGATG 774
||||||| |||||||||||||| ||||||||||||||||| | ||| || || | |||||
Sbjct 719 GAAATCCCACGTTACAAAGTTCGTTTTCTGATGAATCTGATGGTGGGTTTGG-AGTGATG 777
Query 775 GGTTCCA-TTGATCTCTCTGCTCATAATAATATGGATTTTTATCATGGTGCATCGAGTTC 833
|||| || ||||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 778 GGTT-CAGTTGATCTCTCTTCTCAAAATAGTATGGATTTTTATCATGGTGCATCGAGTTC 836
Query 834 TTCAGAAGAGTCGATTCCACAATCAACTAAAGATATTGAAGCTGAAATGAGAAGGCTAAA 893
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 TTCAGAAGAGTCAATTCCACAATCAACTAAAGATATTGAAGCTGAGATGAGAAGGCTAAA 896
Query 894 GCTTGAGCTTAAGCAAACTATGGACATGTATAGCTCAGCTTGTAAAGAAGCACTTACGGC 953
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GCTTGAACTTAAGCAAACTATGGACATGTATAGCTCAGCTTGTAAAGAAGCACTTACGGC 956
Query 954 AAAAAGAAAGGCAAACGAGCTAAATCAGTGGAAAATAGAAGAAGCTCG-AAAGTTCGAGA 1012
||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||
Sbjct 957 AAAAAGAAAGGCAAACGAGCTAAATCAATGGAAGATAGAAGAAGCTCGTAAA-TTCGAGA 1015
Query 1013 AAGCGAGGCTTTCTGAAGAAGCAGCATTGGCAGTTGCGGAAATGGAGAAGGCAAAGTGTA 1072
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1016 AAGCGAGGCTTTCTGAAGAAGCAGCATTGGCAGTTGCTGAAATCGAGAAAGCAAAGTGTA 1075
Query 1073 GAACAGCAGAAGAAGCAGCTGAGAAAGCTCAGAGAATGGCTGAGCTAGAAGGACAAAGAA 1132
||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1076 GAACAGCCGTAGAAGCAGCTGAGAAAGCTCAAAGAATGGCTGAACTAGAAGGACAAAGAA 1135
Query 1133 GGAAGCAAGCGGAGATGAAAGC-GATAAGTGAAGAAAAGGATAAAGACCGCGCAGTGAGT 1191
|||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct 1136 GGAAGCAAGCAGAGATGAAAGCTG-TAAGTGAAGAAAAGGACAAAGACCGCGCAGTGAGT 1194
Query 1192 GCTTTGGCACATAACGATGTTCGCTACAGAAAATATACG-ATAGAAGAGATCGAAGAAGC 1250
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1195 GCTTTGGCACATAACGATGTTCGCTACAGAAAATATA-GTATAGAAGAGATCGAAGAAGC 1253
Query 1251 CACAGAACAG-TTTGCAAATCATAGGAAGATTGGTGAAGGAGGATATGGACCGGTGTATA 1309
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1254 TACAGAG-AGGTTTGCAAATCATAGGAAGATTGGTGAAGGAGGATATGGACCTGTGTACA 1312
Query 1310 ATGGCGAACTTGACCACACTCCTGTTGCCATTAAAGTTTTAAGACCTGATGCTGCTCAAG 1369
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 ATGGTGAACTTGACCACACTCCTGTTGCCATTAAAGTTTTAAGACCTGATGCTGCTCAAG 1372
Query 1370 GaaaaaaaCAATTTCAACAAGAAGTTGAGGTTTTAAGTTCCATAAGGCATCCTCATATGG 1429
|||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||
Sbjct 1373 GAAAAAAACAATTTCAACAAGAAGTTGAGGTTCTATGTTCCATAAGGCATCCTCACATGG 1432
Query 1430 TTCTTCTCCTTGGTGCATGTCCAGAATATGGATGTTTGGTTTATGAGTTCATGGAAAATG 1489
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1433 TTCTTCTCCTTGGTGCATGTCCTGAATATGGATGTTTGGTTTACGAGTTCATGGAAAATG 1492
Query 1490 GGAGCTTAGAGGATAGACTCTTCCGTAGAGGAAACTCTCCACCGCTTTCGTGGAGGAAAC 1549
||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 1493 GGAGCTTAGAGGATAGACTTTTTCGTACTGGAAACTCTCCACCGCTTTCGTGGAGGAAAC 1552
Query 1550 GTTTTGAAATAGCCGCGGAGATTGCTACTGCCCTCTCATTCCTTCATCAAGCTAAGCCAG 1609
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1553 GTTTTGAAATAGCGGCGGAGATTGCTACCGCACTCTCATTCCTTCATCAAGCTAAGCCAG 1612
Query 1610 AACCTTTAGTTCACCGCGACCTTAAACCAGCCAATATACTCTTAGACAGAAACTATGTGA 1669
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||
Sbjct 1613 AACCTTTAGTTCACCGCGACCTAAAACCAGCCAATATACTCTTAGACAAAAACTACGTGA 1672
Query 1670 GCAAGATCAGCGACGTTGGTTTAGCGCGGTTAGTCCCAGCATCGGTAGCTAATAGCGTTA 1729
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| |
Sbjct 1673 GCAAGATCAGCGACGTTGGTTTAGCGCGGTTAGTCCCCGCATCGATAGCTGATAGCGTCA 1732
Query 1730 CACAATACCACATGACATCCGCGGCAGGAACGTTTTGTTACATAGACCCTGAATACCAAC 1789
| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 CGCAATTCCACATGACATCTGCGGCAGGAACGTTTTGTTACATAGACCCTGAATACCAAC 1792
Query 1790 AAACAGGAATGTTAACCACAAAGTCAGACGTATACTCATTTGGGATATTGCTACTTCAGA 1849
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1793 AAACAGGAATGTTAACCACAAAATCAGACGTATACTCATTGGGGATATTGCTACTTCAGA 1852
Query 1850 TCATAACCGCAAGGCCTCCCATGGGGCTGGCTCACCAAGTCTCGAGGGCAATTAGTAAAG 1909
| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1853 TTATAACCGGAAGGCCTCCCATGGGGCTGGCTCACCAAGTTTCAAGGGCAATTAGTAAAG 1912
Query 1910 GAACTTTCAAGGAAATGCTTGACCCCGTCGTGCATGATTGGCCTTTACAAGAGGCTCAAT 1969
|||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||
Sbjct 1913 GAACTTTCAAGGAAATGCTTGACCCCGTTGTGCCTGATTGGCCTGTACAAGAGGCTCAAT 1972
Query 1970 CTTTTGCTACTCTATCGTTGAAATGCGCGGAGCTAAGAAAAAGAGATAGACCCGATCTTG 2029
|||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1973 CTTTTGCTACTCTAGCGTTGAAATGTGCGGAGCTAAGAAAAAGAGATAGACCAGATCTTG 2032
Query 2030 GAAAGGAAGTAGTCCCACATCTTATTAGATTAAAAAACTTTGGGAATGATGTTGAT 2085
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2033 GGAAGGAAGTAGTCCCACATCTTATTAGATTAAAAAACTTTGGGAATGATGGTGAT 2088
> AT5G26146.1 | Symbols: | other RNA | chr5:9135913-9138264 FORWARD
LENGTH=703
Length=703
Score = 592 bits (320), Expect = 6e-168
Identities = 364/386 (94%), Gaps = 0/386 (0%)
Strand=Plus/Minus
Query 1393 GTTGAGGTTTTAAGTTCCATAAGGCATCCTCATATGGTTCTTCTCCTTGGTGCATGTCCA 1452
||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 616 GTTGAGGTTCTATGTTCCATAAGGCATCCTCACATGGTTCTTCTCCTTGGTGCATGTCCT 557
Query 1453 GAATATGGATGTTTGGTTTATGAGTTCATGGAAAATGGGAGCTTAGAGGATAGACTCTTC 1512
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 556 GAATATGGATGTTTGGTTTACGAGTTCATGGAAAATGGGAGCTTAGAGGATAGACTTTTT 497
Query 1513 CGTAGAGGAAACTCTCCACCGCTTTCGTGGAGGAAACGTTTTGAAATAGCCGCGGAGATT 1572
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 496 CGTACTGGAAACTCTCCACCGCTTTCGTGGAGGAAACGTTTTGAAATAGCGGCGGAGATT 437
Query 1573 GCTACTGCCCTCTCATTCCTTCATCAAGCTAAGCCAGAACCTTTAGTTCACCGCGACCTT 1632
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GCTACCGCACTCTCATTCCTTCATCAAGCTAAGCCAGAACCTTTAGTTCACCGCGACCTA 377
Query 1633 AAACCAGCCAATATACTCTTAGACAGAAACTATGTGAGCAAGATCAGCGACGTTGGTTTA 1692
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 376 AAACCAGCCAATATACTCTTAGACAAAAACTACGTGAGCAAGATCAGCGACGTTGGTTTA 317
Query 1693 GCGCGGTTAGTCCCAGCATCGGTAGCTAATAGCGTTACACAATACCACATGACATCCGCG 1752
|||||||||||||| |||||| ||||| ||||||| || |||| |||||||||||| |||
Sbjct 316 GCGCGGTTAGTCCCCGCATCGATAGCTGATAGCGTCACGCAATTCCACATGACATCTGCG 257
Query 1753 GCAGGAACGTTTTGTTACATAGACCC 1778
||||||||||||||||||||||||||
Sbjct 256 GCAGGAACGTTTTGTTACATAGACCC 231
Score = 224 bits (121), Expect = 3e-57
Identities = 137/145 (94%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 1884 CCAAGTCTCGAGGGCAATTAGTAAAGGAACTTTCAAGGAAATGCTTGACCCCGTCGTGCA 1943
|||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 232 CCAAGTTTCAAGGGCAATTAGTAAAGGAACTTTCAAGGAAATGCTTGACCCCGTTGTGCC 173
Query 1944 TGATTGGCCTTTACAAGAGGCTCAATCTTTTGCTACTCTATCGTTGAAATGCGCGGAGCT 2003
|||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 172 TGATTGGCCTGTACAAGAGGCTCAATCTTTTGCTACTCTAGCGTTGAAATGTGCGGAGCT 113
Query 2004 AAGAAAAAGAGATAGACCCGATCTT 2028
|||||||||||||||||| ||||||
Sbjct 112 AAGAAAAAGAGATAGACCAGATCTT 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5