BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894546
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26180.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2196 0.0
> AT5G26180.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:9149227-9153502
FORWARD LENGTH=2113
Length=2113
Score = 2196 bits (1189), Expect = 0.0
Identities = 1398/1499 (93%), Gaps = 14/1499 (1%)
Strand=Plus/Plus
Query 13 CACAAACCCAAAACGCCGCCGGCAAAACAAAGATTTTCCGGCGCCGAGAGTCACAAACCA 72
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 201 CACAAACCAAAAACGCCGCCGGGAAAACAACGATTTTCCGGCGCCGAGAGTCGCAAACCA 260
Query 73 AAAACACCACCAGCTACTAAAC-AACGCTTCTCC-GCCGCCGAGAGATCAGCTCTCTACG 130
|||||||||||||||||||| | || | || ||| | | |||||||||||||||||||
Sbjct 261 AAAACACCACCAGCTACTAAGCAAAAG-TTTTCCAG-CTTAGAGAGATCAGCTCTCTACG 318
Query 131 CCAGAAGAGAAGCAGCTAACGTACTCCGGT-CCATTCTCCGTGGTGACGCCGAGCGCCGA 189
||||||||||||||||||| |||||| || || |||||||||||||||||||||| |||
Sbjct 319 CCAGAAGAGAAGCAGCTAATATACTCC-GTACCGTTCTCCGTGGTGACGCCGAGCGACGA 377
Query 190 GCCGTTGCTTCCATCAAATCACTCGTCTTTAGTCCCTCCGTTCGCAACAAACGCGCCACT 249
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 378 GCCGTTGCTTCCATCAAATCACTCGTCTTAAGTCCTTCCGTTCGCAACAAACGCGGCACT 437
Query 250 TTCGCTCTCGTCTGCGAAACTCTCAAACATCTTACTGTGATTAAAGATGTTCTTGAAATA 309
|||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 438 TTCGCTCTTGTCTGCGAGACTCTCAAATATCTTACTGTGATTAAAGATGTTCTTGATATA 497
Query 310 GCTAATGTATTGAATAGTAAATGGAAGAGGCAAGAGCCATTGGT-TTACATTATTTGCTA 368
|||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 498 GCTAATGTATTGAATAGTAAATGGAAGAGGCAAGAGCCATTGGTCTT-CATCGTTTGCTA 556
Query 369 CGATATCCTCTTTGGCAAGGATACTCCATCAATAGGTGATGCTGAGAAGTTTCTTATGCG 428
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 557 CGATATCCTCTTTGGCAAGGATACTCCATCAATTGGTGATGCAGAGAAGTTTCTTATGCG 616
Query 429 GCATAAAGATGCGTTATTGTCAGGTTTAGCTACGCTTTTAGTGAGAAAGAAAGTCGAAAG 488
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 617 GCATAAAGAGGCGTTATTGTCAGGTTTAGCTACGCTTTTAGTGAGGAAGAAAGTCGATAG 676
Query 489 TGTTGATCAGTTGTTGGGTCTTTCTAAGCTTAATGGTCATTTGAAACCACGTTATGTTCG 548
|||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 677 TGTTGATCAGTTGTTGGG---TTCTAAGCTTACTGGTCATTTGAAACCACGGTATGTTCG 733
Query 549 TGTAAATACACTTAAGATGGATGTGGATTCCGCGGTGCAGGAGCTGGAGAAACATTATAC 608
||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 734 TGTTAATACGCTTAAGATGGATGTGGATTCTGCAGTGCAGGAGCTGGAGAAGCATTACAC 793
Query 609 GGTGCAGAGGGACGAGACAGTTCCTGACTTGTTGGTGTTGCCCCCTGGCAGTGATTTGCA 668
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 794 GGTGCAGAAGGACGAGACAGTTCCTGACTTGTTGGTGTTGCCCCCTGGCAGCGATTTGCA 853
Query 669 TGCTCATCGTTTGGTTGCGAATGGGCGTATATTTTTGCAGGGGAAAGCAAGTTCAATGGT 728
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 854 TGCTCATCGTTTGGTTGCGAATGGACGTATATTTTTGCAGGGGAAAGCAAGTTCAATGGT 913
Query 729 AGCAGCAGCACTGCAGCCAGAAGCAGGATGGGAGGTTCTTGATGCCTGTTCAGCTCCAGG 788
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 914 AGCAGCAGCACTGCAGCCACAAGCAGGATGGGAGGTTCTTGATGCCTGTTCAGCTCCAGG 973
Query 789 AAACAAAACTATTCATCTTGCTGCTCTTATGCAAGGACAAGGAAAAATTATAGCATGCGA 848
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 974 AAACAAAACTATTCATCTTGCTGCTCTTATGGAAGGACAAGGAAAAATCATAGCATGTGA 1033
Query 849 GCTAAATGAAGAACGAGTAAAGCGTTTGGAACATACTATAAAGCTGTCTGGTGCCTCCAA 908
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1034 GCTAAATGAAGAACGAGTTAAGCGTTTGGAACATACTATAAAGCTCTCTGGTGCCTCCAA 1093
Query 909 TATCCAAGTTTTTCATGGTGATTTTTTGGGCTTAAATCCGAAAGATCCTTCTTTTGTGAA 968
|||| |||| | ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1094 TATCGAAGTCTGTCATGGTGATTTTTTGGGCCTAAATCCGAAAGATCCTTCTTTTGCGAA 1153
Query 969 GGTCCGGGCTATATTGTTGGATCCGTCTTGCTCTGGCTCCGGCACCATTACAGATCGTTT 1028
| | |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 1154 GATTCGGGCTATATTGTTGGATCCTTCTTGCTCTGGCTCTGGCACGATTACAGATCGTTT 1213
Query 1029 GGACCATCTCCTCCCTTCTCATTCAGCAG---ATAACATGAACTATGACTCCATGAGGTT 1085
|||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 1214 GGACCATCTCCTTCCTTCTCATTCAGAAGATAATAACATGAACTATGACTCCATGAGACT 1273
Query 1086 ACACAAGCTCGCTGTTTTCCAGAAAAAGGCTCTTGCCCATGCACTCTCCTTTCCACAGGT 1145
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1274 GCACAAGCTCGCTGTTTTCCAGAAAAAGGCTCTTGCCCATGCACTCTCCTTTCCAAAGGT 1333
Query 1146 CGAGAGAGTAGTATACAGCACATGCTCCATCCACCAAATAGAAAACGAAGATGTGGTCTC 1205
|||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1334 TGAGAGAGTCGTATACAGCACATGCTCCATCTACCAAATAGAAAACGAAGATGTCGTCTC 1393
Query 1206 ATCCGTTTTAGCTCTGGCTTCATCCTTGGGCTTCAAACTCGCTACCCCTTTTCCTCAGTG 1265
|| |||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1394 CTCTGTTTTACCTCTGGCATCATCCTTGGGCTTCAAACTTGCTACCCCCTTTCCTCAGTG 1453
Query 1266 GCAGCGTCGTGGTCTCCCTGTATTTGCAGGATCTGAACATCTACTCAGAATGGATCCGGT 1325
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1454 GCAGCGTCGTGGTCTCCCTGTATTTGCAGGATCTGAACATCTACTTAGGATGGATCCGGT 1513
Query 1326 GGAGGACAAAGAAGGGTTCTTCATTGCTTTATTCGTCAAGACAAACAAACTCGATAACCC 1385
|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1514 GGAGGACAAAGAAGGGTTCTTCATCGCTTTATTCGTCAGGGCAAACAAACTCGATAACCC 1573
Query 1386 AAAGCCGTCTGAACTTCCCGAAAGAGAGAGTAGACGAAGACGCAAAGAAAGAACCATGCA 1445
||| |||||||||||||||| |||| | |||||||||||| ||||||||||||||||||
Sbjct 1574 AAAATCGTCTGAACTTCCCGATAGAGTGTGTAGACGAAGACCCAAAGAAAGAACCATGCA 1633
Query 1446 ATTACATCCCTTTCTTTGTCCAAAAATGTTCAGAGCTTTGAGTCGGACCTTGCACAGGC 1504
|||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct 1634 GTTACATCCCTATCTTTGTCCCAAAATGTTCAGAGCTTGGAGTGGGACCTTGCACAGGC 1692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5