BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894572

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G62630.1 | Symbols:  | Protein of unknown function (DUF1645)...   222    2e-57


> AT3G62630.1 | Symbols:  | Protein of unknown function (DUF1645) 
| chr3:23163747-23165195 REVERSE LENGTH=1449
Length=1449

 Score =  222 bits (120),  Expect = 2e-57
 Identities = 181/208 (87%), Gaps = 13/208 (6%)
 Strand=Plus/Plus

Query  98   AGATCTGGAGAACGAGGAAGAAGACGACGACAGAAAAAACCAAACCAGACGGTGGTGTGA  157
            ||||||||||||||||||||||||||||||  ||  | ||||||||| ||   |||| ||
Sbjct  509  AGATCTGGAGAACGAGGAAGAAGACGACGA-TGATGAGACCAAACCAAAC---GGTGAGA  564

Query  158  TTAAGCGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCATCGGAAAGCAAGAtctc  217
            | ||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |
Sbjct  565  TGAAGCGTGGGAGAGATCTGAAACTAAGAAGCAGATCTGTTCACCGGAAGGCCAGATCCC  624

Query  218  tctctcctctcCGAAACGCAGCGTATCAATGGAACCaagaagaagaagaagtcgccaaag  277
            ||||||| ||||||||||||||||||||||||||||||||||||| |||||     || |
Sbjct  625  TCTCTCCGCTCCGAAACGCAGCGTATCAATGGAACCAAGAAGAAGGAGAAG-----AA-G  678

Query  278  agagagaagtcaccggagagagagaagt  305
            | ||| | ||| ||||||||||||||||
Sbjct  679  A-AGA-A-GTCGCCGGAGAGAGAGAAGT  703


 Score =  145 bits (78),  Expect = 4e-34
 Identities = 84/87 (97%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  16   TTCTCGTCGAGGTTGGCTTCAAACAGTGGTCCTTTAGGCGGCGTTTCCATGACTTCAGCT  75
            ||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||
Sbjct  366  TTCTCGTCGAGGTTGTCTTCAAGCAGTGGTCCTTTAGGCGGTGTTTCCATGACTTCAGCT  425

Query  76   GAAGAGCTTTTCTCTAATGGCCAGATC  102
            |||||||||||||||||||||||||||
Sbjct  426  GAAGAGCTTTTCTCTAATGGCCAGATC  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5