BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894591

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26620.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   372    9e-103


> AT5G26620.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G05858.1); 
Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:9366697-9366963 
REVERSE LENGTH=225
Length=225

 Score =  372 bits (201),  Expect = 9e-103
 Identities = 217/225 (96%), Gaps = 0/225 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGCAAGAAGATCGTCTCATCATAGAGTTGAAGCTGATGCATCATGGGACGATGTC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGGAGCAAGAAGATCGTCTCATCATAGAGTTGAAGCTGATGCATCATGGGACGACGTC  60

Query  61   GTTTACACAAGAAAGGCATGGGCCAGCGACGAGGACAAGCGTTATTGGGTGGCTGAGCCA  120
             ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   ATTTACACAAGAAAGGCATGGGCCAGCGACGAGGACAAGCGTTATTGGGTAGCTGAGCCA  120

Query  121  GGTATTGACCGTAAAGCTTCGGCCTTCATCGCCAAGTTCCATGCCTCTCGTGTCTCTGAA  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  121  GGTATTGACCGTAAAGCTTCTGCCTTCATCGCCAAGTTCCATGCCTCTCGTGTCTCTGAG  180

Query  181  TCCGAACGCCAAACTCTCCCTCCTTGTCAATCTCATCATGACTAG  225
            ||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct  181  TCCGAACGCCAAACTCTTCCTCCTTGCCAATCCCATCATGACTAG  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5