BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg894618
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 361 5e-99
AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis t... 230 2e-59
> AT4G36440.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 41 Blast
hits to 41 proteins in 14 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:17206858-17210007
REVERSE LENGTH=1674
Length=1674
Score = 361 bits (195), Expect = 5e-99
Identities = 232/250 (93%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 1 TTTGTAATTGGTGCTACATCTGTACCTGTCCCTGATTTTAATTGCTACGCTCTTGACAAT 60
||||||||||||||| | ||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 189 TTTGTAATTGGTGCTGCGTCTGTACCTGTACCTGATTCTAATTGCTACGCTCTCGACAAT 248
Query 61 TCAAGTCGTCTTGTCGATTTCAGCAGCTGGATCGGCT-TTTCTTTTGAATATGATGGCAA 119
|||||||||||||||||||| |||||||||||||| | | | |||||||||||||||||
Sbjct 249 TCAAGTCGTCTTGTCGATTTTAGCAGCTGGATCGG-TCATCCATTTGAATATGATGGCAA 307
Query 120 GGAATTTGATTTGGTGGTTAGATTCTGCAAGGATGTGGAAACAAGAGGGCAGACGGGATA 179
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 308 GGAATTTGATTTGGTGGTTAGATTTTGCAAGGATGTGGAAACAAGAGGGCAGGCGGGATA 367
Query 180 TGTTGATTTCGGACGGTTTCACCCGTTAAGCTACTTTGTTTCTAGTTCTGGAAATTTCGA 239
||||||||| ||||| ||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 368 TGTTGATTTTGGACGATTTGACCCGTTAAGCTACTTTGTTTCTAGTTCTGAAAATTTCGA 427
Query 240 TTTCGTTCAA 249
|||||| |||
Sbjct 428 TTTCGTGCAA 437
Score = 213 bits (115), Expect = 2e-54
Identities = 171/195 (88%), Gaps = 16/195 (8%)
Strand=Plus/Plus
Query 286 AGTTATGACAAACTTGGACGTACATCACAGGTCAATATTATTTGTGGGAACTGTAGTGAT 345
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 438 AGTTATGACAAACTTGGACGTACAGCACAGGTTAATATTATTTGTGGGAACTGTAGTGAT 497
Query 346 GGACGGTGTAAAGCTGTGTTTGCTTCTGGTGGACTTGGATGCATATGTAGTGTCACCCAA 405
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 498 GGACGGTGTAAA---------------GGTGGACTTGGATGCATATGTAGTGTCACCCAA 542
Query 406 GATTCAACTTGCAGAGTTACTGACGACTTGGCTATTCCATGTGAGAAACCTGGCCCTCTG 465
||||||||||| |||||||||| |||||||||||||||||||||||||||||| || | |
Sbjct 543 GATTCAACTTGTAGAGTTACTGTCGACTTGGCTATTCCATGTGAGAAACCTGGTCCGCGG 602
Query 466 GTGTTCAAGGG-TTT 479
||||| ||||| |||
Sbjct 603 GTGTTTAAGGGATTT 617
> AT5G57740.1 | Symbols: XBAT32 | XB3 ortholog 2 in Arabidopsis
thaliana | chr5:23394585-23397650 REVERSE LENGTH=2236
Length=2236
Score = 230 bits (124), Expect = 2e-59
Identities = 131/134 (98%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 478 TTCAAGTGTTCTTCACGAAGTGATCAACAGAGCAGCAGATGGAGGAATCACACCTCTTCA 537
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 994 TTCTAGTGTTCTTCACGAAGTGATCAACAGAGCAGCAGATGGTGGAATCACACCTCTTCA 1053
Query 538 TGTGGCGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TGTGGCGGCTTTGAACGGACATATAGAGACGGTGCAGTTACTCTTGGATTTGGGAGCTTC 1113
Query 598 GGTTACTC-GGTCA 610
|||||||| |||||
Sbjct 1114 GGTTACTCAGGTCA 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29638146730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5