BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg894620

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26930.1 | Symbols: GATA23 | GATA transcription factor 23 | ...   460    3e-129


> AT5G26930.1 | Symbols: GATA23 | GATA transcription factor 23 
| chr5:9479466-9480200 FORWARD LENGTH=628
Length=628

 Score =  460 bits (249),  Expect = 3e-129
 Identities = 328/365 (90%), Gaps = 9/365 (2%)
 Strand=Plus/Plus

Query  1    ATGGATTCAAGAAAGCTACTATCTTGTTCATCTTCTTACATGTCAACGAGAATGGAAGAA  60
            |||||| |||| |||||||||||||||||||| |||||| |||||  ||||||| |||||
Sbjct  127  ATGGATCCAAGGAAGCTACTATCTTGTTCATCCTCTTACGTGTCAGTGAGAATGAAAGAA  186

Query  61   GAGAAGGAGACAGTTAGGTGTTGCAGTGATTGCAAGACCACCAAGACACCAATGTGGAGA  120
            ||||||| |||| |||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  187  GAGAAGGGGACAATTAGGTGTTGCAGTGAGTGTAAGACCACCAAGACACCAATGTGGAGA  246

Query  121  GGTGGACCAACTGGTCCCAAGTCACTTTGCAATGCATGTGGGATCAGATTCAGGAAACAG  180
            ||||||||||||||||| ||||||||||||||||||||||| || |||  ||| ||||||
Sbjct  247  GGTGGACCAACTGGTCCTAAGTCACTTTGCAATGCATGTGGAATTAGACACAGAAAACAG  306

Query  181  AGACGATCAGAATTATTGGGTATTTGTATTATTCACAGCCACCAAGGCTTAGCTTCCAAG  240
            ||||||||||| ||||||||||||  |||||||| ||||||| || ||||||| ||||||
Sbjct  307  AGACGATCAGAGTTATTGGGTATTCATATTATTCGCAGCCACAAAAGCTTAGCCTCCAAG  366

Query  241  AAGATAAAACCAAAATCATCATCATTATCATCACATGGTGGCGTGGCTGTGAAGAAACGA  300
            |||||||| || |  | ||||||||   || |||  ||||||||||| ||||||||||||
Sbjct  367  AAGATAAA-CCTAT-T-ATCATCAT---CA-CAC--GGTGGCGTGGCGGTGAAGAAACGA  417

Query  301  AGGAGTCTAAAGGAGGAAGAACAAGCTGCTTTGTGTCTACTGTTATTGTCTTGTAGCTCT  360
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  418  AGGAGTCTAAAGGAGGAAGAACAAGCTGCTTTGTGTCTATTGTTATTGTCTTGTAGCTCT  477

Query  361  GTTTT  365
            |||||
Sbjct  478  GTTTT  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5